rs216389792 SNP Detail

Summary

• ID
  rs216389792
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58893929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGCTGAT CTGGGGAGTG
  GCCAGCAGTG TACTTGGTCT CCACTGAGGG GTGAGCTCGG AAGAGGTGAT GGGGCAGGGT
  CTGCTTACCT GAGGTAGGAG ATGACGCCCA TGGCCCTGCA AGAATGAAAA CACCCCATTT
  GTGAGTTACA CCAGGCCTGT CCCACAGGCA AGGGGTATGC ATGGGGGTGG GGTTGGGGGT
  R
  GGGGGGCTGG AAGAGGAGGC AGAGGCTCCT CAGCTGCCAG ACAGACACAC GAAGGACAGG
  GCGACTCCAG ATCAACAGCC CTCTAGGTGG GCCATCCACT CACCAGATGT CTGAGCCCTC
  GCTCACAGGA TTCTGCTCAA TGATCTCTGG GGACACGAAT TCGGGTGAGC CATACTTGCT
  GTACTGTGGC TCTGAAGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss383534488	MGP_WTSI_11_58816605	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	A	A	G	G	G	G	G	A	G	A	A	A	G	G	G	A	G	G	G	G	A	G	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs216389792					SNP	G	G	G	G	G	G	G	A	A	G	G	G	G	G	A	G	A	A	A	G	G	G	A	G	G	G	G	A	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383534488	MGP_WTSI_11_58816605	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58893929 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Tssr101782	transcription start site region 101782	153 bp downstream
Tssr101783	transcription start site region 101783	134 bp downstream
Tssr101784	transcription start site region 101784	122 bp downstream
Tssr108189	transcription start site region 108189	910 bp upstream
Tssr108190	transcription start site region 108190	872 bp upstream
Tssr108191	transcription start site region 108191	737 bp upstream
Tssr108192	transcription start site region 108192	718 bp upstream
Tssr108193	transcription start site region 108193	702 bp upstream
Tssr108194	transcription start site region 108194	654 bp upstream