rs216390253 SNP Detail

Summary

• ID
  rs216390253
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55251657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccgcacaca tataataaat aaactttttt
  ttttaaaaga cagaaaaaTA CCAAAACTCT TGTAGGTTCT TACAGTGCTC TGCGCCTCCC
  AATGAACCTT AAACAGCAAA TAAATATCAC AGGCAAACCC TCTGTCCCAT TTTATGTAGT
  W
  CCCAAATAGG TAGAAACTAG AATGTTTCAC CCAGAATTCA AGATAGAAAA AGGATTACTC
  TTTTTTGCTT aaaaaaaaaa aacaaaaaac aaaaaacaaa aaaaCAATCA CTTTTAtgta
  tgcctatgtc tgtatatagg gaagtcagaa                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324641559	CHEV_14_55633037	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216390253					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55251657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	434 bp proximal
Gm63342	predicted gene, 63342	986 bp downstream
Gm63347	predicted gene, 63347	within coordinates
Ngdn	neuroguidin, EIF4E binding protein	1254 bp upstream
Rr369830	regulatory region 369830	885 bp upstream
Rr369831	regulatory region 369831	1104 bp upstream
Rr404108	regulatory region 404108	within coordinates
Rr492392	regulatory region 492392	764 bp proximal
Rr492393	regulatory region 492393	946 bp proximal
Rr492394	regulatory region 492394	1265 bp proximal
Rr492395	regulatory region 492395	1591 bp proximal
Rr492396	regulatory region 492396	1958 bp proximal
Tssr125743	transcription start site region 125743	1330 bp upstream