rs216391422 SNP Detail

Summary

• ID
  rs216391422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:76302367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTCCCG GGAGGTCCCT
  GAGCACGTGG GTTGTGCTGT CCTGCGCGCG CGGAGCGACT GGAACCTGAT TTTTGCTGGT
  GTTCACCGTG GGTGGCAGAC TAGCAAAGGC CATGGCACCA GCGGGAATCC TGAACGGGAA
  ACTGGTTTCT GCGTAAGTAC TTGCCAGTGA TAGTGGTGGT GGGCTCAGAG CAGGGCGTGC
  R
  GATCCCCAAG CGCCTGGGCT CTGCAGGAGA GGTGCTTAGA TGGGGTTTGC GGGAAGAGAG
  GACATCGACA CGGGCTCCTA GAATCTGAAG ACTGGTTTCC TGAAGCCAGA GAAACACATG
  CCCGGCCCAA TGTGCAATTG CAATAGACTG CCTGGGGTGG CTGCATTCCT AGGTTTGGCG
  GCAAGTCCTG ACCTGACCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104766	CHEV_12_77356580	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216391422					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76302367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	within coordinates
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	Intron
Rr403350	regulatory region 403350	247 bp downstream
Rr468112	regulatory region 468112	170 bp distal
Rr468113	regulatory region 468113	134 bp proximal
Tssr113934	transcription start site region 113934	354 bp downstream
Tssr113935	transcription start site region 113935	336 bp downstream
Tssr113936	transcription start site region 113936	286 bp downstream
Tssr113937	transcription start site region 113937	256 bp downstream
Tssr113938	transcription start site region 113938	224 bp downstream
Tssr113939	transcription start site region 113939	157 bp downstream
Tssr113940	transcription start site region 113940	121 bp downstream
Tssr113941	transcription start site region 113941	99 bp downstream
Tssr116711	transcription start site region 116711	536 bp upstream
Tssr116712	transcription start site region 116712	483 bp upstream