rs216400165 SNP Detail

Summary

• ID
  rs216400165
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97304584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT GTGTGTGTGT GTTTGTGTGT
  G
  TGGTGTGTGT GTGTGTGTCT GTGTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323825548	CHEV_11_97275072	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216400165					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97304584 () rs orientation: forward

Symbol	Name	Function Class
Arhgap23	Rho GTPase activating protein 23	1775 bp upstream
Cpgi3698	CpG island 3698	1741 bp proximal
Gm57393	predicted gene, 57393	within coordinates
Rr386534	regulatory region 386534	398 bp downstream
Rr402912	regulatory region 402912	1443 bp upstream
Rr455765	regulatory region 455765	1018 bp distal
Rr455766	regulatory region 455766	1421 bp proximal
Tssr104623	transcription start site region 104623	1769 bp upstream
Tssr104624	transcription start site region 104624	1796 bp upstream
Tssr104625	transcription start site region 104625	1819 bp upstream