rs216402423 SNP Detail

Summary

• ID
  rs216402423
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156080164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTATCACC CAAGTGCTGG
  GATTAAAGGT TGATAGTGAG AATTTGGAAT TTTGGTTGCT TTAAAAATCA CAAATATTAT
  AAGGGTGTGC TTCCATTTTA ATCCCAGGCA TAAAGATGTG GGGCTGCTCT GGACTCTCCA
  TGGCAGCTGA CTGTGATTTG CCTTGCGCTG TAGCAGAGGC GTGGTTTTGC CAGCTATAGA
  W
  AATGTTCTGC GATTGATTGA CATTTGGAAT TCTGGGAACT TTTCAGAGGA TATATAAATG
  CTAGGGCACC TAGAGGTGTG ATTGGTGGGT GTTCAGGGAG GTTGGTTATG GTTTGCTAGT
  AGTCATTCTC AAAGAAGAAA CAAGAGAAAA AAATTAGATG CAGAGATCTC TCTTTCTCCC
  CCCTCTATCC TTCTTCTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444420	CHEV_4_155369816	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216402423					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156080164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15496	CpG island 15496	1870 bp distal
Rr100725	regulatory region 100725	1163 bp distal
Rr377473	regulatory region 377473	1334 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40753	transcription start site region 40753	632 bp upstream