rs216419989 SNP Detail

Summary

• ID
  rs216419989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120634918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGCTCC CAGCCTAGGA
  ACTCTCCTCC CCCTCTGCCT ATGAGACGTG TCCTTTCAAC TTGGGTTTAG TGAGCTGACC
  AGAGAGGTTG GGATGAGGAG GAAGATGATG CAAGCTTTAA ACGGAGAGGT TTAAAAAATC
  TGAACTGTTC AGCAGTGAAT TCTTGTAGCT AATGAATGGA TTGTGAGCCG TGGGGGTTCT
  R
  CCGGTTGGAT GGGGTTGGAT GGTCTTTTCA TTAGCTATTT GTACCACTTA AAGAAACATG
  CATGGGTCAG CTGTTGAATT AAGAGGGAGG TAGTTTGCAT TTGACCGTAA GTAGTTTGTG
  GTTAACCTTG CAGTCACAGA AGAGAAGCCT TTGAATTTAG ACAAACTTTG CGCTTTTTCT
  AAAAGCCTGA GTTTAGTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372947422	MGP_WTSI_7_128179209	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216419989					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372947422	MGP_WTSI_7_128179209	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120634918 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19654	CpG island 19654	147 bp distal
Gm9905	predicted gene 9905	599 bp upstream
Mettl9	methyltransferase like 9	within coordinates
Rr166622	regulatory region 166622	within coordinates
Rr400600	regulatory region 400600	1009 bp downstream
Tssr68813	transcription start site region 68813	1274 bp downstream
Tssr68814	transcription start site region 68814	1166 bp downstream
Tssr68815	transcription start site region 68815	1115 bp downstream
Tssr68816	transcription start site region 68816	977 bp downstream
Tssr68817	transcription start site region 68817	930 bp downstream
Tssr68818	transcription start site region 68818	902 bp downstream
Tssr68819	transcription start site region 68819	129 bp downstream
Tssr68820	transcription start site region 68820	35 bp downstream
Tssr68821	transcription start site region 68821	971 bp upstream
Tssr74531	transcription start site region 74531	1245 bp upstream