rs216441249 SNP Detail

Summary

• ID
  rs216441249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48040623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCAGCTG GGGCTCCATT
  GCCTTTCCTG CTAAGCAATC TATACCTTCA CCTGTGCCAG CTCACCTTAC CCATCCTGAT
  CGCTGGGACA ATGACACCCC TTTTTTCTCC TGGGCAATCG GCTACTCTGT TTCTAACAGT
  CAATCCTACC ATCTGTTCAC CCCACCATCT GTTCACCCCA CCTGACCTCT CCACTCACCA
  Y
  GCTTCCATGA AGTGTGTCTA AAGGATAGGT TGGAGCAATA CTGGGTGTGG TCTTGTCCGG
  CAGTAGTGTG GGCGGGCAGA TGGAGTTTAC CTTTATAATC CTATTTTGGT CCATGGAAGA
  GCCTTGGAAT CCTATTATCT CTGGTCCAAC GAGTCTCTCT TTGGTTGTGT CTCATGCTAC
  TCAGGGTCTT GATATAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398352951	MGP_WTSI_17_47866647	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216441249					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398352951	MGP_WTSI_17_47866647	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48040623 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	Intron
Rr528106	regulatory region 528106	1011 bp proximal
Tssr5147	transcription start site region 5147	947 bp downstream
Tssr5148	transcription start site region 5148	385 bp upstream
Tssr5149	transcription start site region 5149	1785 bp upstream
Tssr145004	transcription start site region 145004	956 bp downstream
Tssr145005	transcription start site region 145005	935 bp downstream
Tssr145006	transcription start site region 145006	906 bp downstream
Tssr145007	transcription start site region 145007	874 bp downstream
Tssr145008	transcription start site region 145008	853 bp downstream
Tssr145009	transcription start site region 145009	825 bp downstream
Tssr145010	transcription start site region 145010	443 bp downstream
Tssr145011	transcription start site region 145011	424 bp downstream
Tssr145012	transcription start site region 145012	407 bp downstream
Tssr145013	transcription start site region 145013	355 bp downstream
Tssr145014	transcription start site region 145014	382 bp upstream
Tssr145015	transcription start site region 145015	444 bp upstream
Tssr145016	transcription start site region 145016	455 bp upstream
Tssr145017	transcription start site region 145017	900 bp upstream
Tssr145018	transcription start site region 145018	912 bp upstream
Tssr145019	transcription start site region 145019	943 bp upstream
Tssr145020	transcription start site region 145020	964 bp upstream
Tssr145021	transcription start site region 145021	990 bp upstream
Tssr145022	transcription start site region 145022	1022 bp upstream
Tssr145023	transcription start site region 145023	1049 bp upstream
Tssr145024	transcription start site region 145024	1160 bp upstream
Tssr145025	transcription start site region 145025	1504 bp upstream
Tssr145026	transcription start site region 145026	1760 bp upstream
Tssr148459	transcription start site region 148459	897 bp upstream
Tssr148460	transcription start site region 148460	845 bp upstream
Tssr148461	transcription start site region 148461	833 bp upstream
Tssr148462	transcription start site region 148462	790 bp upstream
Tssr148463	transcription start site region 148463	417 bp upstream
Tssr148464	transcription start site region 148464	332 bp upstream
Tssr148465	transcription start site region 148465	423 bp downstream
Tssr148466	transcription start site region 148466	436 bp downstream
Tssr148467	transcription start site region 148467	931 bp downstream
Tssr148468	transcription start site region 148468	962 bp downstream
Tssr148469	transcription start site region 148469	1052 bp downstream