rs216446840 SNP Detail

Summary

• ID
  rs216446840
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130662133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGTGAGA AGGTGGTGAG AAAAGAAAGA
  CTTCTTCTGC TCAGACTCTT TGTATCAGAA ACTAGGTGTG GAAATCCTCA CTCACCCCGT
  GACTGGGTGG TGTCAATGGC ATCCTCTGCA ACTGCATGTG GTGCTGTGTT TTTATTTACG
  T
  GTGTGCCGTC AGAATAACCG ATCAATCTGG AAATACAAAA CTGAACCAGG TAACGCACAG
  ACTTTAAGGC ATGATATAGA AGACAAGGGG ATCTGGGCTC TCAGTAGCAG AGTGGCCAGT
  GATCCTGACT TAAGTATGCT GGTGTCTAGT                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319973025	CHEV_1_132630973	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216446840					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130662133 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AA986860	expressed sequence AA986860			Intron
				Noncoding-Transcript-Variant
Rr417950	regulatory region 417950			1776 bp distal
Rr417951	regulatory region 417951			578 bp distal
Rr417952	regulatory region 417952			77 bp distal
Tssr13523	transcription start site region 13523			1774 bp upstream
Tssr13524	transcription start site region 13524			543 bp upstream