rs216460233 SNP Detail

Summary

• ID
  rs216460233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156079368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTACCCC TGCCAGATGT
  CCCACCTCCT ATTCTCTGCC TTAGCTCATT AACCATAGGC TTTTTTATTG ACAGGTGATG
  CTTATAATAG ATTCTCTACA GCAAAGGTCA GATGCCTTAA CCAAGGTCAC AGAGCTCTGT
  GGTCAAGCTG GGGTCTGGAG AATGAGTGAC CGCAGCCGTC CAATACACAC TGGAATAGTG
  R
  TTAGGGAGGA ATGGAGTCAG GTTTACGTTG TTGTGTTGTT GGTGTGTGGG GTTAGGGTAC
  AGGAAGTGCT GCAACTTTAG CCTGGCCAAG TACATTTCTC CAGTTTCTTT TTTAAAAAGT
  AAAAACATCA TTTGTTGTTT TCCTTTTTCA CTTTTTCTTC TTCATTCCCC CCCCCCCCCC
  CCCCCCGGTA GTGCTGGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444403	CHEV_4_155369020	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216460233					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156079368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15496	CpG island 15496	1074 bp distal
Rr377473	regulatory region 377473	538 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr1404	transcription start site region 1404	1965 bp downstream
Tssr40749	transcription start site region 40749	1724 bp downstream
Tssr40750	transcription start site region 40750	1615 bp downstream
Tssr40751	transcription start site region 40751	1595 bp downstream
Tssr40752	transcription start site region 40752	1456 bp downstream
Tssr40753	transcription start site region 40753	1428 bp upstream