rs216461976 SNP Detail

Summary

• ID
  rs216461976
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96435171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gttcactgg gagacccggg ctcaaaaagt
  aaggtggaga agcaatgaga aaaaaccctt gatgtcaacc tctggcctct gcaTGAATGT
  GCATCAGGTG GTGGAAGCAA GTGTTCAACT GTGTGCACAT GTGcacacac acacacacac
  A
  cacaaacaca cacatacaca aacacatgca caAGCATGCA CCCCCACATA AATACAACGC
  TTTTTTTTGT GTTAAACATA GCTGAAATTT AAAAGTTTTG CATTGGTGGA TCTGAGATTA
  TAGTTCATGG AAGAACACTT GCTTAGCTCC                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323821017	CHEV_11_96405659	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216461976					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96435171 () rs orientation: forward

Symbol	Name	Function Class
Rr252638	regulatory region 252638	572 bp distal
Rr252639	regulatory region 252639	1431 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104542	transcription start site region 104542	1911 bp downstream
Tssr104543	transcription start site region 104543	374 bp upstream
Tssr104544	transcription start site region 104544	1028 bp upstream
Tssr104545	transcription start site region 104545	1081 bp upstream
Tssr104546	transcription start site region 104546	1089 bp upstream
Tssr104547	transcription start site region 104547	1131 bp upstream
Tssr104548	transcription start site region 104548	1225 bp upstream
Tssr104549	transcription start site region 104549	1238 bp upstream
Tssr104550	transcription start site region 104550	1296 bp upstream
Tssr104551	transcription start site region 104551	1324 bp upstream
Tssr104552	transcription start site region 104552	1345 bp upstream