rs216463743 SNP Detail

Summary

• ID
  rs216463743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156080364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTTCTG CGATTGATTG
  ACATTTGGAA TTCTGGGAAC TTTTCAGAGG ATATATAAAT GCTAGGGCAC CTAGAGGTGT
  GATTGGTGGG TGTTCAGGGA GGTTGGTTAT GGTTTGCTAG TAGTCATTCT CAAAGAAGAA
  ACAAGAGAAA AAAATTAGAT GCAGAGATCT CTCTTTCTCC CCCCTCTATC CTTCTTCTCT
  Y
  CTATCTAGTG ATAGGGGATG AAACCAGAGA CAGATAAAGG ATGGGAAAAA GAAGAACCCA
  CAAAGTAGCA AAGACTGGCT ACAAAGGAAT GTGCCATCAC CCCTGGCCTG GTCTGTCTGT
  CTTTGTAGAC TGTCAGGTTG TGGAGCCAGC CATCAGCCTT CAGCTTTCCT GGCAGTGCTA
  GTAACCCAGA GACTTTGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444423	CHEV_4_155370016	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216463743					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156080364 () rs orientation: forward

Symbol	Name	Function Class
Rr100725	regulatory region 100725	1363 bp distal
Rr377473	regulatory region 377473	1534 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40753	transcription start site region 40753	432 bp upstream