rs216465362 SNP Detail

Summary

• ID
  rs216465362
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66056000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGCTGGG CCTTTCTGGA
  CCATCATTTA TTAACTTTTT TCCTACCTGT ATATCTAACA TTCTGCCTGA AGTAGAATTT
  ATTTGTTTTT AAACTCAGAC TTAAAAATTG GTCTCAAATC CCTTTGTGTC AGCATTCAAT
  ACTTAGAGGC TCTCCACCTG GAAACTGTAA ATAGAGAGAA ACTTCAAGCA ATTCCATTAA
  A
  ATCAGGAACA AGACAAGCTT GTCCACTCTC TCCATAGAGC ACTTTTCAAT AAGCACTTGA
  AGTCTTAGCT AGAGTGATAA GACAATTGAA TGAGAGCCAC TGAATACAAA GAGGAAAGGG
  AGAAGTCAAA GCAGATTTAT TTTCACGGGA TCTGATTGTA TACATAAATG ACCCTAAAAA
  CTCACCAGGA AATTCTACAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325658631	CHEV_18_66082583	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216465362					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66056000 () rs orientation: forward

Symbol	Name	Function Class
Gm50118	predicted gene, 50118	561 bp downstream
Gm50119	predicted gene, 50119	1127 bp downstream
Gm58551	predicted gene, 58551	1246 bp upstream
Rr346799	regulatory region 346799	400 bp distal
Rr346800	regulatory region 346800	1401 bp proximal
Rr353052	regulatory region 353052	599 bp distal
Rr353053	regulatory region 353053	1800 bp proximal
Rr393825	regulatory region 393825	1284 bp upstream