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rs216470845 SNP Detail
Summary
  • ID
    rs216470845
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44130174 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCTTCCAAT TCTCATTTCC
TTCCTCCTTT TCCTTAGTCC TGTCTACCAC TACCTCTTCC TCCTCCTCTC CCACTGTCTT
TTCCTGTGCT CACTCCCTTG CCCACTCACC TTCTTTCAAG TTTCTCCTTT ATCTTCTTTA
CTCCTGGACA ACCCCCCAGT ATCATCTTTT TAGTATTTTC CTCCCCCTTT TCTTCTTCCA
Y
CAGATCTCTC CTTCACTCCT ACCCATCTTT TATTCTTCCT TTTTCTCTTC TTCTCCATCG
TTAATTCAAC TCTTCTTTCC CTTCTGTTCC TCAATTCTCC TCCTCCCTGC TTCTTCATTT
CTTTGAATAC TATCCATCTT CATCCCTCTT TCTCTTCATT CCTCTCTTCT ACCCTTTCTT
TTCCTTCTGT TCCTCCACAT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156145 MGP_WTSI_7_51736120 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216470845 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156145 MGP_WTSI_7_51736120 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44130174 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646103 regulatory region 646103 1834 bp proximal
Tssr2227 transcription start site region 2227 1730 bp downstream
Tssr2228 transcription start site region 2228 667 bp downstream
Tssr2229 transcription start site region 2229 392 bp downstream
Tssr2230 transcription start site region 2230 209 bp downstream
Tssr2231 transcription start site region 2231 82 bp downstream
Tssr2232 transcription start site region 2232 91 bp upstream
Tssr2233 transcription start site region 2233 124 bp upstream
Tssr2234 transcription start site region 2234 283 bp upstream
Tssr2235 transcription start site region 2235 917 bp upstream
Tssr66289 transcription start site region 66289 1922 bp downstream
Tssr66290 transcription start site region 66290 1884 bp downstream
Tssr66291 transcription start site region 66291 1858 bp downstream
Tssr66292 transcription start site region 66292 1826 bp downstream
Tssr66293 transcription start site region 66293 1804 bp downstream
Tssr66294 transcription start site region 66294 1780 bp downstream
Tssr66295 transcription start site region 66295 1515 bp downstream
Tssr66296 transcription start site region 66296 1344 bp downstream
Tssr66297 transcription start site region 66297 1320 bp downstream
Tssr66298 transcription start site region 66298 1265 bp downstream
Tssr66299 transcription start site region 66299 1245 bp downstream
Tssr66300 transcription start site region 66300 1222 bp downstream
Tssr66301 transcription start site region 66301 1206 bp downstream
Tssr66302 transcription start site region 66302 1165 bp downstream
Tssr66303 transcription start site region 66303 1156 bp downstream
Tssr66304 transcription start site region 66304 1151 bp downstream
Tssr66305 transcription start site region 66305 1112 bp downstream
Tssr66306 transcription start site region 66306 1058 bp downstream
Tssr66307 transcription start site region 66307 1009 bp downstream
Tssr66308 transcription start site region 66308 992 bp downstream
Tssr66309 transcription start site region 66309 942 bp downstream
Tssr66310 transcription start site region 66310 873 bp downstream
Tssr66311 transcription start site region 66311 850 bp downstream
Tssr66312 transcription start site region 66312 831 bp downstream
Tssr66313 transcription start site region 66313 821 bp downstream
Tssr66314 transcription start site region 66314 803 bp downstream
Tssr66315 transcription start site region 66315 796 bp downstream
Tssr66316 transcription start site region 66316 731 bp downstream
Tssr66317 transcription start site region 66317 715 bp downstream
Tssr66318 transcription start site region 66318 674 bp downstream
Tssr66319 transcription start site region 66319 646 bp downstream
Tssr66320 transcription start site region 66320 622 bp downstream
Tssr66321 transcription start site region 66321 598 bp downstream
Tssr66322 transcription start site region 66322 582 bp downstream
Tssr66323 transcription start site region 66323 544 bp downstream
Tssr66324 transcription start site region 66324 491 bp downstream
Tssr66325 transcription start site region 66325 450 bp downstream
Tssr66326 transcription start site region 66326 440 bp downstream
Tssr66327 transcription start site region 66327 420 bp downstream
Tssr66328 transcription start site region 66328 402 bp downstream
Tssr66329 transcription start site region 66329 363 bp downstream
Tssr66330 transcription start site region 66330 350 bp downstream
Tssr66331 transcription start site region 66331 336 bp downstream
Tssr66332 transcription start site region 66332 303 bp downstream
Tssr66333 transcription start site region 66333 268 bp downstream
Tssr66334 transcription start site region 66334 262 bp downstream
Tssr66335 transcription start site region 66335 251 bp downstream
Tssr66336 transcription start site region 66336 237 bp downstream
Tssr66337 transcription start site region 66337 221 bp downstream
Tssr66338 transcription start site region 66338 137 bp downstream
Tssr66339 transcription start site region 66339 105 bp downstream
Tssr66340 transcription start site region 66340 38 bp downstream
Tssr66341 transcription start site region 66341 within coordinates
Tssr66342 transcription start site region 66342 29 bp upstream
Tssr66343 transcription start site region 66343 61 bp upstream
Tssr66344 transcription start site region 66344 206 bp upstream
Tssr66345 transcription start site region 66345 239 bp upstream
Tssr66346 transcription start site region 66346 295 bp upstream
Tssr66347 transcription start site region 66347 333 bp upstream
Tssr66348 transcription start site region 66348 374 bp upstream
Tssr66349 transcription start site region 66349 398 bp upstream
Tssr66350 transcription start site region 66350 426 bp upstream
Tssr66351 transcription start site region 66351 434 bp upstream
Tssr66352 transcription start site region 66352 470 bp upstream
Tssr66353 transcription start site region 66353 544 bp upstream
Tssr66354 transcription start site region 66354 558 bp upstream
Tssr66355 transcription start site region 66355 585 bp upstream
Tssr66356 transcription start site region 66356 602 bp upstream
Tssr66357 transcription start site region 66357 616 bp upstream
Tssr66358 transcription start site region 66358 628 bp upstream
Tssr66359 transcription start site region 66359 654 bp upstream
Tssr66360 transcription start site region 66360 666 bp upstream
Tssr66361 transcription start site region 66361 692 bp upstream
Tssr66362 transcription start site region 66362 724 bp upstream
Tssr66363 transcription start site region 66363 741 bp upstream
Tssr66364 transcription start site region 66364 774 bp upstream
Tssr66365 transcription start site region 66365 794 bp upstream
Tssr66366 transcription start site region 66366 814 bp upstream
Tssr66367 transcription start site region 66367 842 bp upstream
Tssr66368 transcription start site region 66368 864 bp upstream
Tssr66369 transcription start site region 66369 898 bp upstream
Tssr66370 transcription start site region 66370 940 bp upstream
Tssr66371 transcription start site region 66371 1365 bp upstream
Tssr66372 transcription start site region 66372 1528 bp upstream
Tssr66373 transcription start site region 66373 1818 bp upstream
Tssr66374 transcription start site region 66374 1876 bp upstream
Tssr66375 transcription start site region 66375 1887 bp upstream
Tssr66376 transcription start site region 66376 1900 bp upstream
Tssr66377 transcription start site region 66377 1939 bp upstream
Tssr66378 transcription start site region 66378 1961 bp upstream
Tssr66379 transcription start site region 66379 1973 bp upstream
Tssr72201 transcription start site region 72201 1799 bp upstream
Tssr72202 transcription start site region 72202 942 bp upstream
Tssr72203 transcription start site region 72203 562 bp upstream
Tssr72204 transcription start site region 72204 25 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory