rs216471725 SNP Detail

Summary

• ID
  rs216471725
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79756314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCGGCGC GCGGCGCGCG
  AGGTCCCTGC AGAGCCGAGG GGAGGGCGGA GCAGGGCTCC CGGCCGCAAT AAAATGCGGG
  GTCAGGCGGA GCAGACAGAG CCGGGGCGAC GCGGGCTCGC AGACCCCCCT GCCCCGCCAG
  CCCGAGCAGA GTCCGTGACT AAAGTGCATC CCAGCCCTCC TGGCCCTAGC CACACACGCC
  W
  ACTGGAGACT CGCGCCGGGC TGCGCGGCCG GGTCCCCGTC CCCTCCTCCA CCCGCGCCTC
  GGGTCCCTCC GCGCCGCCCT CCCGCTTTTC TTTGCGAGAC TCTTAACTTT TCCCCCACTC
  CCTCTCGGGC TCCCCCCTCG TCCCCCCACA AGCTCTCCGC TCGGAGTGTT CCGAGATGCT
  GCTGAAGCTA AAAGTGAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322721752	CHEV_8_81553584	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216471725					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79756314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20619	CpG island 20619	1256 bp distal
Cpgi20620	CpG island 20620	within coordinates
Gm63940	predicted gene, 63940	within coordinates
Rr400985	regulatory region 400985	1078 bp downstream
Rr665784	regulatory region 665784	1088 bp distal
Rr665785	regulatory region 665785	577 bp distal
Rr665786	regulatory region 665786	424 bp proximal
Tssr2612	transcription start site region 2612	1319 bp downstream
Tssr78123	transcription start site region 78123	1707 bp downstream
Tssr78124	transcription start site region 78124	1448 bp downstream
Tssr78125	transcription start site region 78125	1376 bp downstream
Tssr78126	transcription start site region 78126	1335 bp downstream
Tssr78127	transcription start site region 78127	1072 bp downstream
Tssr78128	transcription start site region 78128	1031 bp downstream
Zfp827	zinc finger protein 827	within coordinates