rs216485577 SNP Detail

Summary

• ID
  rs216485577
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109738612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGTGTC ATATATTGTT
  CAGCATATAG ACTACAGCAA GCAAGCCTTC GGAGCTGTTT CCAACAGAGG CACAATCTCA
  TATGCGTACA CTGACCGTCC TGAAGAACAC CCAAAACACT ATGCTTATAT TTGAAAAATG
  CACAAGGTAA GTGCTATTCC AAAAATAGTT GCCCCAGCAA ACTCTATTGC TTAAAACTTG
  M
  AATTAAGTTT ACTGACAGAA AGCCCAGTGT ACAGAATTAC ATACTATAGG AACAGCAGAA
  CAAACAGGAG AAGAAGAGAA AAACTAGGTC AGAGGTCAGA AAACACACCT ACAGGCATGG
  TACGCGGTAG TCAGCGTTCC TCAGAGTCTG AGGTTGTTGC ACGGACAGTG GACACACAGA
  AATCCTGGGA GCAGATGATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458390	CHEV_10_109339807	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216485577					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109738612 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr224236	regulatory region 224236	988 bp proximal
Tssr99236	transcription start site region 99236	1063 bp downstream
Tssr99237	transcription start site region 99237	1079 bp downstream
Tssr99238	transcription start site region 99238	1101 bp downstream
Tssr99239	transcription start site region 99239	1124 bp downstream
Tssr99240	transcription start site region 99240	1160 bp downstream
Tssr99241	transcription start site region 99241	1201 bp downstream
Tssr99242	transcription start site region 99242	1261 bp downstream