rs216485596 SNP Detail

Summary

• ID
  rs216485596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94005972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAGCCCC ATCCTTTCAG
  AAATATCTTT TCAGTACATA GCCCTATCAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAG
  CAGAGCAAAT GCTAATGCTA AAAGTATTAG GCAGTAATAA TTAATTAATT TTAAAAAAAC
  AGCTGAGAAA ATAAGTTCTA AAACCCAAAC CTAGAATCAT TTAAAAAAGA AAAAAGAAAA
  R
  ACTTGGAAAG GCGGGGTAAA TAAAGAAAAC CATAACTAGT AGTCTATTGA TAACCAGTAG
  TCTATTGATC CAATGTAAGC ATACTGTTAA AGATTTGCTC AAATGTGCAT ACATATGCAC
  GTATGTGTAT ACAACACATA TATACATGTA TTATATATCT GCAAGTCTGG ATTTTACATG
  TAGAATTTTG TTTTTACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321864588	CHEV_6_93978985	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216485596					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94005972 () rs orientation: forward

Symbol	Name	Function Class
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	within coordinates
Tssr62166	transcription start site region 62166	152 bp upstream