rs216490303 SNP Detail

Summary

• ID
  rs216490303
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:16422567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTCCAAA TCAGACCCAG
  AAGGTAGAGT TGCCCCACCA GGGAGGGAAC AGTGTGGGTT CTGAAGTCGA TGAGAAAGGT
  TTGCTATGAG ATGAGAGTTA AAGCAGAGGG CAAATCCTAC TGAGACTTCT GAGTCCACAG
  TAGCAGCTCA TGTTCCCAGA AGCTCAAGAG TTGACATGTT GACCATGGAG AACACATCAC
  R
  GTGGATTGTG CAGGGAAAGT GTCCATTATT CTTACCACAA CCACAACCCA GTGTGATCAG
  CTGGTGGCTG TGACTTAAAG CTCAGTAGGA TCCTGAATGT GATGACCAGA GGACACAGCT
  CCTTTAGAGA CTTTTATCCT TCTAGAGCCA CAGAGTCTAG AGATTTGGAG ATGGAAACAT
  AAATTCTAGA AAATGGGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	SJL/J	SPRET/EiJ
ss385254541	MGP_WTSI_12_16379372	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	SJL/J	SPRET/EiJ
rs216490303					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385254541	MGP_WTSI_12_16379372	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16422567 () rs orientation: forward

Symbol	Name	Function Class
Gm36372	predicted gene, 36372	within coordinates
Rr262937	regulatory region 262937	1230 bp distal
Rr269311	regulatory region 269311	1820 bp proximal
Rr386910	regulatory region 386910	1860 bp upstream