rs216503521 SNP Detail

Summary

• ID
  rs216503521
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58663384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAAATGT CAAACTCAAA
  TGTGCTTCAG TAATTGCCTT GTGGGCCCTG ATCCAAATCC TTGCCTCGCC ATCTCCAAAT
  ATGACCTCAT GTGTCCTTCC TGGGTTTCTC TCTCAGCAGT GGGAGGACAC ACAGGATTCT
  AAGCCTAGTT GAACTAATTT CTGTTTCTTC TTAATGGTGT GGGGGATGCT CTGAAGGGGG
  K
  AGGGAACACG TCTCCTTAGA AACCAAGGTC TGGAGGCACC CTTGACCATC TGGCATTTTG
  AATTACTTGG AAACATTTTA ATGAAGCTTT CCTTCCAACA GTCTGATCTG GGATACTCAC
  TTAACAATGT CCACCTGATT GGCCACAGCC TGGGTTCCCA CATTGCTGGG GAGGCTGGAA
  AGAGGACCTT TGGAGCCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402923792	MGP_WTSI_19_58749442	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	G	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216503521					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	G	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402923792	MGP_WTSI_19_58749442	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58663384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	1015 bp proximal
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	within coordinates
Tssr5571	transcription start site region 5571	1825 bp downstream
Tssr157266	transcription start site region 157266	1867 bp downstream
Tssr157267	transcription start site region 157267	1848 bp downstream
Tssr157268	transcription start site region 157268	1794 bp downstream
Tssr157269	transcription start site region 157269	1201 bp downstream
Tssr157270	transcription start site region 157270	1127 bp downstream
Tssr157271	transcription start site region 157271	104 bp upstream
Tssr157272	transcription start site region 157272	115 bp upstream
Tssr157273	transcription start site region 157273	1246 bp upstream
Tssr157274	transcription start site region 157274	1278 bp upstream
Tssr157275	transcription start site region 157275	1298 bp upstream
Tssr157276	transcription start site region 157276	1321 bp upstream
Tssr157277	transcription start site region 157277	1562 bp upstream
Tssr159959	transcription start site region 159959	1815 bp upstream
Tssr159960	transcription start site region 159960	1767 bp upstream
Tssr159961	transcription start site region 159961	196 bp downstream