rs216511314 SNP Detail

Summary

• ID
  rs216511314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151923117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCGCTCCT TCCACCAGTT
  CTGAAGAAGA AAGTTGAATC CCAAACCCAA CAGGGGGCTC TAGTAGGAGC CCAAGCTGGG
  GGCAGGGAGA CTAGTTAGAT CTGGGCATCC AGATTGCCAC TTCAGAACTG GGGCAGAGGG
  AGCCGGCCAC AGGCAGAGGG TGGTGGCTGG CCGGCTTACT CTTACATCCT CCCCCCCCCC
  Y
  CCCCGTCCTA ATGTGCCTGA ATCCCACCTG CTCGGGCCGC TCATCCTTCA ATCTTCTTGT
  CTTCTCCCTC TATTTAGCAC CTTTCTTTCC CTTTCTTCGC ATCCCCCTCA GGGTGTGTGT
  GGAGAGCATC CTTTTTGTTT GTGTGTCCTG ATCTCGCTTT TTCTCTTGAG GGCGCCTGAG
  TGTTTTGCCA CTTTCTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss356144203	MGP_WTSI_2_151906933	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs216511314					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144203	MGP_WTSI_2_151906933	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151923117 () rs orientation: forward

Symbol	Name	Function Class
AA387200	expressed sequence AA387200	within coordinates
Cpgi12434	CpG island 12434	194 bp distal
Cpgi12435	CpG island 12435	308 bp proximal
Gm75114	predicted gene, 75114	within coordinates
Rr567274	regulatory region 567274	833 bp distal
Rr567275	regulatory region 567275	within coordinates
Rr567276	regulatory region 567276	251 bp proximal
Rr567277	regulatory region 567277	343 bp proximal
Scrt2	scratch family zinc finger 2	620 bp upstream
Tssr20749	transcription start site region 20749	367 bp downstream
Tssr20750	transcription start site region 20750	323 bp downstream
Tssr20751	transcription start site region 20751	291 bp downstream
Tssr20752	transcription start site region 20752	258 bp downstream
Tssr20753	transcription start site region 20753	243 bp downstream
Tssr20754	transcription start site region 20754	222 bp downstream
Tssr20755	transcription start site region 20755	60 bp downstream
Tssr20756	transcription start site region 20756	35 bp upstream
Tssr20757	transcription start site region 20757	177 bp upstream
Tssr20758	transcription start site region 20758	405 bp upstream
Tssr20759	transcription start site region 20759	435 bp upstream
Tssr20760	transcription start site region 20760	613 bp upstream
Tssr20761	transcription start site region 20761	671 bp upstream