rs216521271 SNP Detail

Summary

• ID
  rs216521271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31148275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCGAAA GTGGTTATCT
  TCCTCCACCT CTTACCGTCT CTGGAAAAAT TAAAAAGAAA GAAAGAAAGA AAAAAACACA
  CCCGAAAACA CCAACCAAAG TGCTTAGTGA ATCAGAATGG GTCACTTATG GAGGCTAAGA
  GCAGCTGGGG CAGCAAGATC TGTCCCCGCG GTGCGCAAAC CGCGGACTCT GGGGCGATGG
  Y
  GGCCGGGTCA GGCCACCCCA GAGCGGCCAG GCGGGGCTGC TCACCGGCAG CTGGCAGGGC
  GGCCGCGGCG GGAGGCCCCA CGGGGGCGAG AGGCCCCGCG ACGTCGGCAC TGGGCGGGGG
  GAGGGTGGCA ACACTGGGAG CGGGGAGCAC GGGGGCAGGT GGTGGCGCTG CGGGGGGGGG
  GGCGGTGGCA GCGCGGGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433254	MGP_WTSI_3_30993048	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216521271					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433254	MGP_WTSI_3_30993048	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31148275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	125 bp downstream
Rr397631	regulatory region 397631	309 bp downstream
Rr574879	regulatory region 574879	219 bp distal
Rr574880	regulatory region 574880	151 bp proximal
Rr574881	regulatory region 574881	442 bp proximal
Rr574882	regulatory region 574882	1010 bp proximal
Rr574883	regulatory region 574883	1041 bp proximal
Rr574884	regulatory region 574884	1705 bp proximal
Skil	SKI-like	984 bp upstream
Tssr28706	transcription start site region 28706	219 bp downstream
Tssr28707	transcription start site region 28707	76 bp downstream
Tssr28708	transcription start site region 28708	540 bp upstream
Tssr28709	transcription start site region 28709	568 bp upstream
Tssr28710	transcription start site region 28710	593 bp upstream
Tssr28711	transcription start site region 28711	811 bp upstream
Tssr28712	transcription start site region 28712	835 bp upstream
Tssr28713	transcription start site region 28713	926 bp upstream
Tssr28714	transcription start site region 28714	1771 bp upstream
Tssr32911	transcription start site region 32911	1701 bp downstream