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rs216526493 SNP Detail
Summary
  • ID
    rs216526493
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44129305 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTCTCCACTT CCTCCACCTC
CTCCTCCTGC TGCTTCCCCT CTTCCTCCTG CTTCTTCCTT CTCCATCTTT TCTACCTGAT
CTTCCCCTTT TTCTGTGAAT TTTTCTCTAC CTCACTGTTC ACCCTCCCTC CTCCTAGCCT
TTTCGTCCAG CTTCCCACCT CCCCATTCCA CCTCTTCCAC TCTCTGTCCT CCCACTTCCT
Y
CTTCCTTTAC TGGTCCCTCT CTTTTCCCCT TACATTCTTC CTCTTCCTTC TTTTCATCCT
CATCTTCCCA TCACTGTCTC CTTTCTAGCT TTCTCCTCCT CCTCCTCCTC CTCCTCCTCC
TCCTCCTCCT CTTCCTCCTT CTCTGGCTCT GTCTCCCCTT CCTTGCCCTC TCTCTTTCTC
TTCTTTTTCT CCTCCCTGTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156128 MGP_WTSI_7_51735251 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216526493 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156128 MGP_WTSI_7_51735251 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44129305 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2226 transcription start site region 2226 1936 bp downstream
Tssr2227 transcription start site region 2227 861 bp downstream
Tssr2228 transcription start site region 2228 197 bp upstream
Tssr2229 transcription start site region 2229 473 bp upstream
Tssr2230 transcription start site region 2230 652 bp upstream
Tssr2231 transcription start site region 2231 785 bp upstream
Tssr2232 transcription start site region 2232 960 bp upstream
Tssr2233 transcription start site region 2233 993 bp upstream
Tssr2234 transcription start site region 2234 1152 bp upstream
Tssr2235 transcription start site region 2235 1786 bp upstream
Tssr66259 transcription start site region 66259 1965 bp downstream
Tssr66260 transcription start site region 66260 1858 bp downstream
Tssr66261 transcription start site region 66261 1837 bp downstream
Tssr66262 transcription start site region 66262 1830 bp downstream
Tssr66263 transcription start site region 66263 1818 bp downstream
Tssr66264 transcription start site region 66264 1794 bp downstream
Tssr66265 transcription start site region 66265 1751 bp downstream
Tssr66266 transcription start site region 66266 1734 bp downstream
Tssr66267 transcription start site region 66267 1697 bp downstream
Tssr66268 transcription start site region 66268 1681 bp downstream
Tssr66269 transcription start site region 66269 1645 bp downstream
Tssr66270 transcription start site region 66270 1610 bp downstream
Tssr66271 transcription start site region 66271 1578 bp downstream
Tssr66272 transcription start site region 66272 1526 bp downstream
Tssr66273 transcription start site region 66273 1508 bp downstream
Tssr66274 transcription start site region 66274 1503 bp downstream
Tssr66275 transcription start site region 66275 1483 bp downstream
Tssr66276 transcription start site region 66276 1463 bp downstream
Tssr66277 transcription start site region 66277 1443 bp downstream
Tssr66278 transcription start site region 66278 1399 bp downstream
Tssr66279 transcription start site region 66279 1354 bp downstream
Tssr66280 transcription start site region 66280 1332 bp downstream
Tssr66281 transcription start site region 66281 1292 bp downstream
Tssr66282 transcription start site region 66282 1275 bp downstream
Tssr66283 transcription start site region 66283 1261 bp downstream
Tssr66284 transcription start site region 66284 1249 bp downstream
Tssr66285 transcription start site region 66285 1235 bp downstream
Tssr66286 transcription start site region 66286 1196 bp downstream
Tssr66287 transcription start site region 66287 1160 bp downstream
Tssr66288 transcription start site region 66288 1135 bp downstream
Tssr66289 transcription start site region 66289 1053 bp downstream
Tssr66290 transcription start site region 66290 1015 bp downstream
Tssr66291 transcription start site region 66291 989 bp downstream
Tssr66292 transcription start site region 66292 957 bp downstream
Tssr66293 transcription start site region 66293 935 bp downstream
Tssr66294 transcription start site region 66294 911 bp downstream
Tssr66295 transcription start site region 66295 646 bp downstream
Tssr66296 transcription start site region 66296 475 bp downstream
Tssr66297 transcription start site region 66297 451 bp downstream
Tssr66298 transcription start site region 66298 396 bp downstream
Tssr66299 transcription start site region 66299 376 bp downstream
Tssr66300 transcription start site region 66300 353 bp downstream
Tssr66301 transcription start site region 66301 337 bp downstream
Tssr66302 transcription start site region 66302 296 bp downstream
Tssr66303 transcription start site region 66303 287 bp downstream
Tssr66304 transcription start site region 66304 282 bp downstream
Tssr66305 transcription start site region 66305 243 bp downstream
Tssr66306 transcription start site region 66306 189 bp downstream
Tssr66307 transcription start site region 66307 140 bp downstream
Tssr66308 transcription start site region 66308 123 bp downstream
Tssr66309 transcription start site region 66309 73 bp downstream
Tssr66310 transcription start site region 66310 4 bp downstream
Tssr66311 transcription start site region 66311 5 bp upstream
Tssr66312 transcription start site region 66312 21 bp upstream
Tssr66313 transcription start site region 66313 42 bp upstream
Tssr66314 transcription start site region 66314 50 bp upstream
Tssr66315 transcription start site region 66315 70 bp upstream
Tssr66316 transcription start site region 66316 129 bp upstream
Tssr66317 transcription start site region 66317 141 bp upstream
Tssr66318 transcription start site region 66318 186 bp upstream
Tssr66319 transcription start site region 66319 209 bp upstream
Tssr66320 transcription start site region 66320 236 bp upstream
Tssr66321 transcription start site region 66321 254 bp upstream
Tssr66322 transcription start site region 66322 274 bp upstream
Tssr66323 transcription start site region 66323 320 bp upstream
Tssr66324 transcription start site region 66324 349 bp upstream
Tssr66325 transcription start site region 66325 379 bp upstream
Tssr66326 transcription start site region 66326 420 bp upstream
Tssr66327 transcription start site region 66327 434 bp upstream
Tssr66328 transcription start site region 66328 450 bp upstream
Tssr66329 transcription start site region 66329 489 bp upstream
Tssr66330 transcription start site region 66330 508 bp upstream
Tssr66331 transcription start site region 66331 522 bp upstream
Tssr66332 transcription start site region 66332 543 bp upstream
Tssr66333 transcription start site region 66333 591 bp upstream
Tssr66334 transcription start site region 66334 603 bp upstream
Tssr66335 transcription start site region 66335 612 bp upstream
Tssr66336 transcription start site region 66336 621 bp upstream
Tssr66337 transcription start site region 66337 639 bp upstream
Tssr66338 transcription start site region 66338 695 bp upstream
Tssr66339 transcription start site region 66339 746 bp upstream
Tssr66340 transcription start site region 66340 791 bp upstream
Tssr66341 transcription start site region 66341 836 bp upstream
Tssr66342 transcription start site region 66342 898 bp upstream
Tssr66343 transcription start site region 66343 930 bp upstream
Tssr66344 transcription start site region 66344 1075 bp upstream
Tssr66345 transcription start site region 66345 1108 bp upstream
Tssr66346 transcription start site region 66346 1164 bp upstream
Tssr66347 transcription start site region 66347 1202 bp upstream
Tssr66348 transcription start site region 66348 1243 bp upstream
Tssr66349 transcription start site region 66349 1267 bp upstream
Tssr66350 transcription start site region 66350 1295 bp upstream
Tssr66351 transcription start site region 66351 1303 bp upstream
Tssr66352 transcription start site region 66352 1339 bp upstream
Tssr66353 transcription start site region 66353 1413 bp upstream
Tssr66354 transcription start site region 66354 1427 bp upstream
Tssr66355 transcription start site region 66355 1454 bp upstream
Tssr66356 transcription start site region 66356 1471 bp upstream
Tssr66357 transcription start site region 66357 1485 bp upstream
Tssr66358 transcription start site region 66358 1497 bp upstream
Tssr66359 transcription start site region 66359 1523 bp upstream
Tssr66360 transcription start site region 66360 1535 bp upstream
Tssr66361 transcription start site region 66361 1561 bp upstream
Tssr66362 transcription start site region 66362 1593 bp upstream
Tssr66363 transcription start site region 66363 1610 bp upstream
Tssr66364 transcription start site region 66364 1643 bp upstream
Tssr66365 transcription start site region 66365 1663 bp upstream
Tssr66366 transcription start site region 66366 1683 bp upstream
Tssr66367 transcription start site region 66367 1711 bp upstream
Tssr66368 transcription start site region 66368 1733 bp upstream
Tssr66369 transcription start site region 66369 1767 bp upstream
Tssr66370 transcription start site region 66370 1809 bp upstream
Tssr72200 transcription start site region 72200 1440 bp upstream
Tssr72201 transcription start site region 72201 930 bp upstream
Tssr72202 transcription start site region 72202 73 bp upstream
Tssr72203 transcription start site region 72203 298 bp downstream
Tssr72204 transcription start site region 72204 894 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory