rs216541638 SNP Detail

Summary

• ID
  rs216541638
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:23117630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAACCCT GTGCTTTTTT
  TTTTTTTTTT TTTTTTTTTT TTTGAGTTCT GCGGTCGTCT ACCTGATAAG GTAGACCAGT
  CTTGTTCTCT ACAATTGTGA AGCAAGAGGA AGGAAAGGCT TGCCCAGCAG GAACAGGGAG
  GAGTCCCTAC AAAGAAAAGG ATTTTTTCAA GTTATGCAAA TGCAATGTCT TATTGGTCTC
  W
  GTTTATGGGT TAAGATAGCT TCAAGACAGA GCGAATTTAG AGTCAAAGGC GCCCAAGGAA
  GTAGGAGGTT TAGCAAAATG CCAAGATGGC GGTGCTTTTG TGTAAGAACC ATTTAATACG
  GAACCGGATC TTTTGTTAGC TGTGAAAAAT TTTAGATGAA TTTCTCTTGG TTAATGTGTG
  GGGTGAAAGA ACTTTTAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402048955	MGP_WTSI_19_23214756	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	T	T	T	T	T	A	T	T	A	A	T	A	A	T	A	A	A	T	T	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216541638					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	T	T	T	T	T	A	T	T	A	A	T	A	A	T	A	A	A	T	T	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402048955	MGP_WTSI_19_23214756	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23117630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	388 bp proximal
Gm56648	predicted gene, 56648	within coordinates
Gm59174	predicted gene, 59174	within coordinates
Klf9	Kruppel-like transcription factor 9	960 bp upstream
Rr405898	regulatory region 405898	334 bp upstream
Rr545290	regulatory region 545290	113 bp distal
Rr545291	regulatory region 545291	within coordinates
Rr545292	regulatory region 545292	838 bp proximal
Tssr155578	transcription start site region 155578	155 bp downstream
Tssr155579	transcription start site region 155579	556 bp upstream
Tssr155580	transcription start site region 155580	674 bp upstream
Tssr155581	transcription start site region 155581	690 bp upstream
Tssr155582	transcription start site region 155582	713 bp upstream
Tssr155583	transcription start site region 155583	753 bp upstream
Tssr155584	transcription start site region 155584	798 bp upstream
Tssr155585	transcription start site region 155585	860 bp upstream
Tssr155586	transcription start site region 155586	917 bp upstream
Tssr155587	transcription start site region 155587	1376 bp upstream
Tssr155588	transcription start site region 155588	1410 bp upstream
Tssr158621	transcription start site region 158621	371 bp downstream
Tssr158622	transcription start site region 158622	701 bp downstream
Tssr158623	transcription start site region 158623	1790 bp downstream