rs216544012 SNP Detail

Summary

• ID
  rs216544012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45236109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGCTCTC TCCTTGAACC
  AGAAGCTCAC TGGTTCTGTT AGTCTGTGGC TGATCAGAGT CGCAGCACCC TTATCACTAG
  AAGGACAGCC ACACACAGCC AAGTCCAGCT TTCTGCCCTC CTGGTCTCCC ATGATGCACC
  ATAACCTCTA GAAAGTCCAA CAAGCTGTGA ATGGCACACC CAGGGCTTCT CAGGCACAAT
  Y
  AGGAGCATCC GGAGTGGCTG GCATGCAGCT TGTTTGCTGG GTCATTGTTA CCCTAGAGAC
  CATGGGGATG GGGTCAGAAG GAATGGATGG GATGTAGTGG TGGGAAAGGG CCCAAGTTAT
  CCAGGTGCTA ACTTTGTCAT AGACACCTGC CTATGCAGCT TGAACAGCTT CTGCTCTGGA
  GGAGGCTTCG GGAAGGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322943014	CHEV_9_45132894	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216544012					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45236109 () rs orientation: forward

Symbol	Name	Function Class
Rr203899	regulatory region 203899	within coordinates
Rr203900	regulatory region 203900	784 bp proximal
Rr203901	regulatory region 203901	1612 bp proximal
Tmprss13	transmembrane protease, serine 13	within coordinates