rs216550174 SNP Detail

Summary

• ID
  rs216550174
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60437485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC TCCCTTTCTT TTCTTTTCTT
  Y
  TTTTTTTTTT TTTCCTAAAG CAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss640088377	FVB_NJ_3_60333986	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	C	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T	C	T	C	C	T	T	C	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs216550174					SNP	C	T	T	T	C	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T	C	T	C	C	T	T	C	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640088377	FVB_NJ_3_60333986	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60437485 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577418	regulatory region 577418			905 bp distal
Rr577419	regulatory region 577419			1820 bp proximal
Tssr29294	transcription start site region 29294			1930 bp downstream
Tssr29295	transcription start site region 29295			1808 bp downstream
Tssr29296	transcription start site region 29296			1748 bp downstream
Tssr29297	transcription start site region 29297			1569 bp downstream
Tssr29298	transcription start site region 29298			1543 bp downstream
Tssr29299	transcription start site region 29299			1285 bp downstream
Tssr29300	transcription start site region 29300			807 bp downstream
Tssr29301	transcription start site region 29301			611 bp downstream
Tssr29302	transcription start site region 29302			483 bp downstream
Tssr29303	transcription start site region 29303			325 bp downstream
Tssr29304	transcription start site region 29304			12 bp upstream
Tssr29305	transcription start site region 29305			255 bp upstream
Tssr29306	transcription start site region 29306			1170 bp upstream