rs216550433 SNP Detail

Summary

• ID
  rs216550433
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76702623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTG ACTCTATTAG TTCTAGCCCT
  K
  CTGGGGTTCC TAAGCTTGAG ATATA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325022643	CHEV_15_76648853	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216550433					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76702623 () rs orientation: forward

Symbol	Name	Function Class
Arhgap39	Rho GTPase activating protein 39	257 bp upstream
Cpgi7256	CpG island 7256	within coordinates
Gm41350	predicted gene, 41350	within coordinates
Gm62667	predicted gene, 62667	1177 bp downstream
Rr390937	regulatory region 390937	1177 bp upstream
Rr404466	regulatory region 404466	34 bp downstream
Rr504853	regulatory region 504853	438 bp distal
Rr504854	regulatory region 504854	569 bp distal
Rr504855	regulatory region 504855	151 bp distal
Rr504856	regulatory region 504856	201 bp distal
Rr504857	regulatory region 504857	within coordinates
Rr504858	regulatory region 504858	60 bp distal
Tssr131826	transcription start site region 131826	129 bp downstream
Tssr135056	transcription start site region 135056	1390 bp upstream
Tssr135057	transcription start site region 135057	249 bp upstream