rs216557617 SNP Detail

Summary

• ID
  rs216557617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8797119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGATGTT TAAGCACAGA
  AAGAGGTCCC GGCATTGCTC TCTCCCTCTC TCTCTCTCCC TTGATGCTGG AAAGGCCTTT
  CCCTCCTGGC TACGAAAACC CTGCACCACC CATCCTTCCA GCTTGGCTTC GGTTACTAGT
  CTCAGAAGTT ACAGTCAAAG AATAAGCAAG AGAGGACATC GAGTAAGCCC TAGGGTGCTC
  Y
  GGTAATTGGG AGCGGGCAGG AAGTAAGAGA CCTGAGATGG GCGGGACTCC GGCGCGACTG
  CGCAGAGCCT ACGACTGAAG TACGGAAAGA GGAGCGCGCT CACGCTTCCG TGCTACGAGG
  CACTTGAGCC GCAGCCAGCC TTGCCCGACT CAGGCCCCTG TGCGGCTGCG CGGTTAGGCC
  GCTTGCGCTG ATTGGCCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401708498	MGP_WTSI_19_8894245	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216557617					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401708498	MGP_WTSI_19_8894245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8797119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10577	CpG island 10577	within coordinates
Hnrnpul2	heterogeneous nuclear ribonucleoprotein U-like 2	255 bp upstream
Rr363768	regulatory region 363768	within coordinates
Rr370451	regulatory region 370451	within coordinates
Tssr154829	transcription start site region 154829	181 bp downstream
Tssr154830	transcription start site region 154830	147 bp downstream
Tssr154831	transcription start site region 154831	211 bp upstream
Tssr154832	transcription start site region 154832	294 bp upstream
Tssr154833	transcription start site region 154833	310 bp upstream
Tssr154834	transcription start site region 154834	373 bp upstream
Tssr154835	transcription start site region 154835	461 bp upstream
Tssr154836	transcription start site region 154836	498 bp upstream
Tssr154837	transcription start site region 154837	915 bp upstream
Tssr154838	transcription start site region 154838	938 bp upstream
Tssr158063	transcription start site region 158063	1043 bp upstream
Tssr158064	transcription start site region 158064	747 bp upstream
Tssr158065	transcription start site region 158065	564 bp upstream
Tssr158066	transcription start site region 158066	504 bp upstream
Tssr158067	transcription start site region 158067	454 bp upstream
Tssr158068	transcription start site region 158068	405 bp upstream
Tssr158069	transcription start site region 158069	2 bp downstream
Tssr158070	transcription start site region 158070	1555 bp downstream
Ttc9c	tetratricopeptide repeat domain 9C	422 bp upstream