rs216558711 SNP Detail

Summary

• ID
  rs216558711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149979238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAATATA CAGACTTGTA
  GCTCTGGTAG ACAAATTATT TTAGAATTTT GTGGCTATGA AAAAGTCACT TATTGAGCTA
  GATTGGTGAT TAAGAACAGT TGTTGCTTTT GCTTAAGTTC TTAACACCTA CATGACAGTT
  CACAACCACC TATAACTCCA GTCAGTTCTA GGAGATTCCA TGTTTTGTAA CATTTTAGGG
  Y
  ACCAGACAAG CACATGACAT ACATACATAC ATACATACAT AGAGGCAAAT TCTCATACAT
  ATAAAAATAA AATAAATCTT AAGAAAATCA CGTGGTGAAT TTTAAAGACA ACTAAATCAT
  CAATATTGAA TAAGAAATTA TAGTAAAAAA TCAGTAAATT GAACTTTCTC CATACTTAAT
  TTTCTAGGTG GACTTAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351888744	MGP_WTSI_1_151950617	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216558711					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888744	MGP_WTSI_1_151950617	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149979238 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	763 bp proximal
Rr24983	regulatory region 24983	795 bp proximal
Rr31002	regulatory region 31002	1838 bp distal
Tssr242	transcription start site region 242	682 bp downstream
Tssr9230	transcription start site region 9230	1374 bp downstream
Tssr9231	transcription start site region 9231	1341 bp downstream
Tssr9232	transcription start site region 9232	1298 bp downstream
Tssr9233	transcription start site region 9233	842 bp downstream
Tssr9234	transcription start site region 9234	813 bp downstream
Tssr9235	transcription start site region 9235	782 bp downstream
Tssr9236	transcription start site region 9236	757 bp downstream
Tssr9237	transcription start site region 9237	725 bp downstream
Tssr9238	transcription start site region 9238	694 bp downstream
Tssr9239	transcription start site region 9239	660 bp downstream
Tssr9240	transcription start site region 9240	646 bp downstream
Tssr9241	transcription start site region 9241	616 bp downstream
Tssr9242	transcription start site region 9242	600 bp downstream
Tssr9243	transcription start site region 9243	473 bp downstream
Tssr9244	transcription start site region 9244	422 bp downstream
Tssr9245	transcription start site region 9245	386 bp downstream
Tssr9246	transcription start site region 9246	367 bp downstream
Tssr9247	transcription start site region 9247	232 bp downstream
Tssr9248	transcription start site region 9248	178 bp upstream
Tssr9249	transcription start site region 9249	205 bp upstream
Tssr9250	transcription start site region 9250	373 bp upstream
Tssr9251	transcription start site region 9251	419 bp upstream
Tssr9252	transcription start site region 9252	474 bp upstream
Tssr9253	transcription start site region 9253	504 bp upstream
Tssr9254	transcription start site region 9254	531 bp upstream
Tssr9255	transcription start site region 9255	550 bp upstream
Tssr9256	transcription start site region 9256	790 bp upstream
Tssr9257	transcription start site region 9257	814 bp upstream
Tssr9258	transcription start site region 9258	837 bp upstream
Tssr9259	transcription start site region 9259	862 bp upstream
Tssr9260	transcription start site region 9260	917 bp upstream
Tssr9261	transcription start site region 9261	972 bp upstream
Tssr9262	transcription start site region 9262	980 bp upstream
Tssr9263	transcription start site region 9263	1002 bp upstream
Tssr9264	transcription start site region 9264	1047 bp upstream
Tssr9265	transcription start site region 9265	1078 bp upstream
Tssr9266	transcription start site region 9266	1167 bp upstream
Tssr9267	transcription start site region 9267	1458 bp upstream
Tssr9268	transcription start site region 9268	1514 bp upstream
Tssr9269	transcription start site region 9269	1897 bp upstream
Tssr9270	transcription start site region 9270	1937 bp upstream
Tssr9271	transcription start site region 9271	1961 bp upstream
Tssr9272	transcription start site region 9272	1991 bp upstream