rs216559079 SNP Detail

Summary

• ID
  rs216559079
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31149857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTAAGCG TCCGGCGACG
  CGGGCTTCCG GGCTTGGCGC CTAACCTGCC CGCGCCCCTG TGGGTGCCAC GGCTCAGGGT
  GGGTCAAGTG GGGGGAGGCG CAGCCCTGGG GCGCCTAGGT AACCCTAGAG AACTTCCCGC
  GGGCCGGGGG CGTGGGGTAT TTCCACCGGC GGCCCCCGCA GTGGGGCGAT GTGGGGAGGG
  M
  ACTTAGGGTG ATCCCAGTCA CAGAGGTGGG GGTTGGGAGG ACTCCTACTT CCTCTGCCCC
  CTCTCACCTC ACCAGACGCC GGGAGTCCCC TGCTTCCCTG TCCTTTGGGT TGATGATGAG
  TGGGTGTCTC TGCGTGTGCG CAGGGCTGTG GGGGCGCCCC TGGTCTAGGT CATGCCTTCT
  GCCCTTTTCC TTGGCTCGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433271	MGP_WTSI_3_30994630	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216559079					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433271	MGP_WTSI_3_30994630	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31149857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	1707 bp downstream
Rr397631	regulatory region 397631	1891 bp downstream
Rr574879	regulatory region 574879	1801 bp distal
Rr574880	regulatory region 574880	1410 bp distal
Rr574881	regulatory region 574881	573 bp distal
Rr574882	regulatory region 574882	within coordinates
Rr574883	regulatory region 574883	520 bp distal
Rr574884	regulatory region 574884	123 bp proximal
Skil	SKI-like	within coordinates
Tssr28706	transcription start site region 28706	1801 bp downstream
Tssr28707	transcription start site region 28707	1658 bp downstream
Tssr28708	transcription start site region 28708	1020 bp downstream
Tssr28709	transcription start site region 28709	996 bp downstream
Tssr28710	transcription start site region 28710	979 bp downstream
Tssr28711	transcription start site region 28711	760 bp downstream
Tssr28712	transcription start site region 28712	732 bp downstream
Tssr28713	transcription start site region 28713	585 bp downstream
Tssr28714	transcription start site region 28714	189 bp upstream
Tssr28715	transcription start site region 28715	666 bp upstream
Tssr28716	transcription start site region 28716	1132 bp upstream
Tssr32911	transcription start site region 32911	119 bp downstream