rs216562539 SNP Detail

Summary

• ID
  rs216562539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40059672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACACAGA AAACCAGGAC
  CTATTATGTT AGATGTATAG GCATATTATT ATTTCTTCTC TTGGAATAGT TTAAAATTGC
  CTTTACATTG TCTTTGGGGA CACATGTAAA AGAACCAAGA GGCTGTATAT GCTCATACAC
  AAAAATAGCT CTTACTGCTT TCTCAAAGGA AGTATTCAGT CCAAAACAGC TGTGCGAGTT
  Y
  TTAATTTAAA TTTCTAGCCA TAGCTGAAAA ATTATTAAAA ATCATTTGGT AACTGGGAAA
  CAGAAAGCAG TATCGCTTTT CAATATAGAG ACTAAAGTAG AGAAGCTCCT TACATGCCAA
  ACTCAACTAA AGCCTAAAGA AAGCCCTGGG GAAAGGAGAT GAGATCAAAA CACTTTTATA
  AAAAGTATGA GAAAATAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374370450	MGP_WTSI_8_40691985	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216562539					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374370450	MGP_WTSI_8_40691985	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40059672 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr2550	transcription start site region 2550	1157 bp upstream
Tssr80998	transcription start site region 80998	1613 bp upstream
Tssr80999	transcription start site region 80999	1551 bp upstream
Tssr81000	transcription start site region 81000	1367 bp upstream
Tssr81001	transcription start site region 81001	1351 bp upstream
Tssr81002	transcription start site region 81002	1325 bp upstream
Tssr81003	transcription start site region 81003	1299 bp upstream
Tssr81004	transcription start site region 81004	1247 bp upstream
Tssr81005	transcription start site region 81005	1222 bp upstream
Tssr81006	transcription start site region 81006	1185 bp upstream
Tssr81007	transcription start site region 81007	1120 bp upstream
Tssr81008	transcription start site region 81008	1019 bp upstream
Tssr81009	transcription start site region 81009	988 bp upstream
Tssr81010	transcription start site region 81010	966 bp upstream
Tssr81011	transcription start site region 81011	899 bp upstream
Tssr81012	transcription start site region 81012	870 bp upstream
Tssr81013	transcription start site region 81013	706 bp upstream
Tssr81014	transcription start site region 81014	673 bp upstream
Tssr81015	transcription start site region 81015	916 bp downstream
Tssr81016	transcription start site region 81016	1521 bp downstream