rs216563996 SNP Detail

Summary

• ID
  rs216563996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90626393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCACTCAC AGTGTCAGAG
  ACATCTGGAA GCTTCTACAG CCCCAACAGC ACAATGCTGC CTGCCCCCAT CCCTCAGGGA
  GCACGGTTCC CTTACTGGGC CCGCATCTTC ATGCCCTGCC AAAGAACCTG ACACACACTG
  GTAGCCAATC TAGATCTAGA TGAGGGGATA AGATAGACGA ATAGGAGGGA CCCGAGGTCT
  R
  CACACTCTTT CTCCAGTGGT CTTTGTGAAT TGAGCAACCT TACCTACTCT TCCAGCCTTA
  GTTTACCCAA CATAAGACGT TCATATTAAA CTTATATCCC ATGATTATTG AGGCTGTGTT
  TTTAAAAAAG ATTGTGTGTG TGTGGGGGGG GGGGCAGAGT AGAGTTCGAG TTCGTGGGTC
  CCCTGAGAGA GATTCAGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397306181	MGP_WTSI_16_90829750	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216563996					SNP	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397306181	MGP_WTSI_16_90829750	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90626393 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8431	CpG island 8431			364 bp proximal
Eva1c	eva-1 homolog C			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr519212	regulatory region 519212			1610 bp distal
Rr519213	regulatory region 519213			864 bp proximal
Tssr139312	transcription start site region 139312			576 bp upstream
Tssr139313	transcription start site region 139313			611 bp upstream
Tssr139314	transcription start site region 139314			900 bp upstream
Tssr139315	transcription start site region 139315			1325 bp upstream
Tssr139316	transcription start site region 139316			1624 bp upstream
Tssr139317	transcription start site region 139317			1710 bp upstream