rs216569742 SNP Detail

Summary

• ID
  rs216569742
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148990091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAGGCCC GTTCATTGGC
  CCGTTCCCTC CCATTGTCCT GACCAGAGCC CGCGCGCCAT TGGCTGTCTG CGAGGACACG
  TCACCGAGGA TTGAAACAGC GCGCAAATCT GAATGTGTGT GTGTGTGCCG GGCCGAGAGG
  CTGAGGCGGG AGAGGCAGCG GCAGAGGCAG CAGCTGCTAC GGGAAAGCGG AGCTCTATGG
  W
  GTCTCTGTGC CTGCGCCTGC CCCGAGCCAG CCCCACGCCC GAGCCGCGGC GCGCGCGGCC
  AGGGCCCGGC TCCGCCGCAG CCACGGCTGC GTCCCCAGGC CCGGGCGCCT CCCCGCAGGC
  CCGCCCCCCC TCCCGCTCCA CGCTCCCGCC CCGAGCCGTT GGGATGTGCG GCCCGTGCTT
  GGGGATGCCT CCCCGAGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss367145526	MGP_WTSI_5_149864857	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs216569742					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367145526	MGP_WTSI_5_149864857	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148990091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	within coordinates
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	578 bp proximal
Hmgb1	high mobility group box 1	224 bp upstream
Rr124812	regulatory region 124812	within coordinates
Rr378801	regulatory region 378801	1265 bp downstream
Rr399531	regulatory region 399531	within coordinates
Tssr1757	transcription start site region 1757	51 bp downstream
Tssr49872	transcription start site region 49872	72 bp downstream
Tssr54614	transcription start site region 54614	1968 bp upstream
Tssr54615	transcription start site region 54615	1891 bp upstream
Tssr54616	transcription start site region 54616	1826 bp upstream
Tssr54617	transcription start site region 54617	1657 bp upstream
Tssr54618	transcription start site region 54618	1573 bp upstream
Tssr54619	transcription start site region 54619	1302 bp upstream
Tssr54620	transcription start site region 54620	228 bp upstream
Tssr54621	transcription start site region 54621	210 bp upstream