rs216573138 SNP Detail

Summary

• ID
  rs216573138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75369700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAAGGC AAATCTGGTG
  GCCACGTTTG TCTCAAGTAA TGTATATTGT TCATTATTTT GTAAACAGCA GAAATGTTTC
  TATTCTTAAG GATAAAGGTG TGGGCAGTCT ATTCTTAAAA GCTGAGACCT ACTGGAATTC
  AGTTTCAATG ACAGATGTGT TTCAAATGTA TGCTTAGCTT TGCATAGTCA AAAATCAAGG
  Y
  AAGTGCATTT GTTAATTAAA AAAAAATGCT TTGTCATTCT TTGCAGGTTT CTTTTGGCAA
  CTACCATGCC AGACCCAGGG CAGTTTAATA TGTAACCTCA GCAGTTGTCA GTATTTTGTT
  TTCTATAACT ATTGCTGTAA CTATAGTTCC AACCATTTAG AGAAATGAAA TAGTAATGAA
  AATTAAATCC CTGGTTTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391575958	MGP_WTSI_14_75532067	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216573138					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391575958	MGP_WTSI_14_75532067	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75369700 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	1468 bp distal
Cpgi6737	CpG island 6737	1000 bp distal
Gm62951	predicted gene, 62951	1639 bp upstream
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Lrrc63	leucine rich repeat containing 63	1379 bp upstream
Rr297500	regulatory region 297500	99 bp distal
Tssr4477	transcription start site region 4477	1626 bp upstream
Tssr126606	transcription start site region 126606	1110 bp downstream
Tssr126607	transcription start site region 126607	1019 bp downstream
Tssr126608	transcription start site region 126608	982 bp downstream
Tssr126609	transcription start site region 126609	697 bp downstream
Tssr126610	transcription start site region 126610	653 bp downstream
Tssr126611	transcription start site region 126611	222 bp downstream
Tssr126612	transcription start site region 126612	206 bp downstream
Tssr129761	transcription start site region 129761	1655 bp upstream
Tssr129762	transcription start site region 129762	1638 bp upstream
Tssr129763	transcription start site region 129763	1611 bp upstream
Tssr129764	transcription start site region 129764	1317 bp upstream
Tssr129765	transcription start site region 129765	1214 bp upstream
Tssr129766	transcription start site region 129766	678 bp upstream
Tssr129767	transcription start site region 129767	626 bp upstream