rs216588357 SNP Detail

Summary

• ID
  rs216588357
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98308489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTAGAGG AGGCCCTAAC
  CCCTCCAAGA GTGGGAAACT GGTGACCTGC AGGCCCCAAT TAGCAATACC ACAGCAGACT
  CCGGAAGGTC AGTCAGCCTC AGGCCTCTGT CAGCATTCTG GGATTTCTCA GAGGCCAGGA
  TACTCCCAGT GTCTCTTGTA TGGTCTTCTG TCCAGAACTA GCTTGTGTTT GCTTCCAGGA
  K
  CTGCCTTGCT TTGCAGGAAA GGGAAGCTTG CTACCCTTCC CTCACTTGCC AAGGGTATTT
  ATAGTGGCCT ACTGTATACC CTGCACTTCC CACCACAGCT CAGGGAAGGG GCAACTGGGA
  ACTCCCTATT CAGCCAGTGA CTAGAGGGAA GAAAATTGCA GGAGTAGGTT TTTGAACCTT
  CTTGTGTTGA AGGCCACACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323129394	CHEV_9_98326855	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216588357					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98308489 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	743 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685258	regulatory region 685258	944 bp proximal
Rr685259	regulatory region 685259	1824 bp proximal
Tssr2984	transcription start site region 2984	1332 bp downstream
Tssr86646	transcription start site region 86646	1604 bp downstream
Tssr86647	transcription start site region 86647	1531 bp downstream
Tssr86648	transcription start site region 86648	1501 bp downstream
Tssr86649	transcription start site region 86649	1466 bp downstream
Tssr86650	transcription start site region 86650	1106 bp downstream
Tssr86651	transcription start site region 86651	923 bp downstream