rs216588675 SNP Detail

Summary

• ID
  rs216588675
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:42518543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATGTGCAC AAGCAGATAC
  ACAGGCACGC GCGCGCGAAC AGACACACAC ACACACACAC ACACACACAC ACACACACAC
  ACTCAGTCGC AAGCATGAAC ATACGCGCTA AAACTCTCCA TCACTGCTTC AATGTGTGCT
  TCAGGACCAA CTTAAGAAAG AATAAGTCTC TTGCCAGTTT AACTTTAGGA GGGATAAACT
  S
  AAGGGGGAGG GGGGTGTCCT CCTATTTTTC TATTCGTCCT TGCGCTACAG AAAAGCCAAG
  CAGGTGAACA TGGTGCTAGG TACATACAAG CTCTGGGGGG GGGGGGAGGT TAAGAGAGCA
  ACTCCAAATT GCCTTCCATT GAAGGTATGA CCCCAGTGCA TCAAGGGGCA GCAGGACAGG
  TCAGCATTAA GAAAATCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403349539	MGP_WTSI_X_40782843	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216588675					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403349539	MGP_WTSI_X_40782843	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:42518543 () rs orientation: forward

Symbol	Name	Function Class
Rr8575	regulatory region 8575	within coordinates
Rr394981	regulatory region 394981	168 bp upstream
Tenm1	teneurin transmembrane protein 1	540 bp upstream
Tssr5616	transcription start site region 5616	737 bp upstream
Tssr163248	transcription start site region 163248	804 bp upstream
Tssr163249	transcription start site region 163249	710 bp upstream
Tssr163250	transcription start site region 163250	681 bp upstream
Tssr163251	transcription start site region 163251	653 bp upstream
Tssr163252	transcription start site region 163252	616 bp upstream
Tssr163253	transcription start site region 163253	597 bp upstream