rs216602643 SNP Detail

Summary

• ID
  rs216602643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172152693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTCACC TGCGTCTTCC
  TTATGCTCCC TGACGGCTAG GACCTCTTCA AGGACCTGTT TTTGCTCCAG TACTACTAGT
  CTTTTTCCTA CCTGCCCCCA AGCTCTTGAC AGTGTAGGCC TGAGTGAAAG TACTGATGTC
  ACCGTTCCTT CTGGAAAGGG GCTAGAAATG GCAACACCAG GGGAAGTTAA GAGTGGCAGA
  Y
  GGGGTAACGG GGACAGAAGG GAGACCAGTT ATCCCTCCCT ACCCCTAAGT TATTCCTTGG
  GAATAACTTA GGTCAGTTAA ATTCCAGAGC TATGGACCTC TGGGCTTCAA GAACCCTGCA
  CTTAACCTTC ATCCCAACAC TGTACCAGGA AACACTGAAG ATAGATGTCC TATGTTCAAC
  CCAGGCTGTG CTATTTATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss352403513	MGP_WTSI_1_174255257	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs216602643					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352403513	MGP_WTSI_1_174255257	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172152693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	418 bp proximal
Gm36937	predicted gene, 36937	1465 bp downstream
Gm70847	predicted gene, 70847	1154 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	within coordinates
Rr423525	regulatory region 423525	200 bp distal
Rr423526	regulatory region 423526	10 bp distal
Rr423527	regulatory region 423527	664 bp proximal
Rr423528	regulatory region 423528	771 bp proximal
Rr423529	regulatory region 423529	1186 bp proximal
Rr423530	regulatory region 423530	1713 bp proximal
Tssr15210	transcription start site region 15210	1092 bp downstream
Tssr15211	transcription start site region 15211	1102 bp downstream
Tssr15212	transcription start site region 15212	1122 bp downstream