rs216602950 SNP Detail

Summary

• ID
  rs216602950
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:121215555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACCTTA ACCCCCCAAT
  TTCATCACCC TCACCGCCCC CCTTTATTTT TCTCTCTCCT CTTCTGCTCT CCCGCCCTCT
  TCCCTCCGCC AGCTCCCCCT CCTTTTTTTT TTTTTTTTTT TAATTTGCAT CTCAAGTCCA
  AAAGGCAGAA AATACACACG CGGCGAAGAC GCCGGGCCGC CGTGGAGGCT CCAGCCCTTC
  M
  TTGGTCAATT ACCTCACTGT GGATCTGCTC CGGCCGAGGT GGCCGAACCT GCCCGGGCGC
  TGGACGGAAA GGCAGCCTTT GATCATCTCG GAGAAGGAAA AGGAAAAAAC ACAAACTGGT
  TTCTACCCAC GGTGCTCCGG GGATCGCTCT TCTGCTTTTA TTTTATTGTT TTGGACATTT
  TTGAGCGCCG TGGCTTGGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376271974	MGP_WTSI_8_123012716	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216602950					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376271974	MGP_WTSI_8_123012716	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121215555 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21144	CpG island 21144			415 bp distal
Cpgi21145	CpG island 21145			within coordinates
Gm51556	predicted gene, 51556			within coordinates
Gm63872	predicted gene, 63872			881 bp downstream
Gse1	genetic suppressor element 1, coiled-coil protein			Intron
				mRNA-UTR
Rr401178	regulatory region 401178			1612 bp downstream
Rr671534	regulatory region 671534			1126 bp distal
Rr671535	regulatory region 671535			359 bp distal
Rr671536	regulatory region 671536			746 bp distal
Rr671537	regulatory region 671537			389 bp distal
Rr671538	regulatory region 671538			564 bp proximal
Tssr79753	transcription start site region 79753			1651 bp downstream
Tssr79754	transcription start site region 79754			1167 bp downstream
Tssr79755	transcription start site region 79755			1150 bp downstream
Tssr79756	transcription start site region 79756			616 bp downstream
Tssr79757	transcription start site region 79757			591 bp downstream
Tssr79758	transcription start site region 79758			575 bp downstream
Tssr79759	transcription start site region 79759			326 bp downstream
Tssr79760	transcription start site region 79760			306 bp downstream
Tssr79761	transcription start site region 79761			247 bp downstream
Tssr79762	transcription start site region 79762			68 bp downstream
Tssr79763	transcription start site region 79763			13 bp downstream
Tssr79764	transcription start site region 79764			5 bp upstream
Tssr79765	transcription start site region 79765			237 bp upstream
Tssr83193	transcription start site region 83193			516 bp downstream
Tssr83194	transcription start site region 83194			612 bp downstream