About   Help   FAQ
rs216607619 SNP Detail
Summary
  • ID
    rs216607619
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:93351849 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGAGGAGGA CGAGCTGACG
CGGATCCGGG AACCCGACGA GAGCATTACC CAGAGGTGGC AGTGGCAGCT CGAAAACGAG
GCAGACGCCC GTCAGAACAA GGTCTACTCT AGGCCTAGCA GGCAGGAGCA GAGGCTTCGC
CAGGAGCTGG GGGAGCGTCA GCTCCGGGAG CAGGAGGAGC AGCGCCGCGA CCTCCAACAG
S
AGCGTCCCGC TGAGGAGGCG CGCCAGCGCA ACCAGTGGGA GAGGCCGCAG CGGGCGGAGG
AGCGCCTGGA GCAGGAGCAG CGGTTCCGCG ACAGGGAGGA GCAGCGCTTC CGGGAGGAGA
AGCTGCAACG AGCAGAGCTC CAGGACAGCC TCCTAGATGA AGAACAGAGG CGACTCCAGG
AGGAACGCCG AGAGCCAAAC                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876325 MGP_WTSI_3_93248464 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216607619 SNP G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876325 MGP_WTSI_3_93248464 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93351849 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 1112 bp downstream
Tssr961 transcription start site region 961 536 bp downstream
Tssr962 transcription start site region 962 581 bp upstream
Tssr963 transcription start site region 963 618 bp upstream
Tssr964 transcription start site region 964 714 bp upstream
Tssr30347 transcription start site region 30347 1069 bp downstream
Tssr30348 transcription start site region 30348 1049 bp downstream
Tssr30349 transcription start site region 30349 1037 bp downstream
Tssr30350 transcription start site region 30350 993 bp downstream
Tssr30351 transcription start site region 30351 969 bp downstream
Tssr30352 transcription start site region 30352 919 bp downstream
Tssr30353 transcription start site region 30353 900 bp downstream
Tssr30354 transcription start site region 30354 885 bp downstream
Tssr30355 transcription start site region 30355 866 bp downstream
Tssr30356 transcription start site region 30356 812 bp downstream
Tssr30357 transcription start site region 30357 757 bp downstream
Tssr30358 transcription start site region 30358 639 bp downstream
Tssr30359 transcription start site region 30359 613 bp downstream
Tssr30360 transcription start site region 30360 583 bp downstream
Tssr30361 transcription start site region 30361 258 bp downstream
Tssr30362 transcription start site region 30362 242 bp downstream
Tssr30363 transcription start site region 30363 100 bp downstream
Tssr30364 transcription start site region 30364 28 bp downstream
Tssr30365 transcription start site region 30365 within coordinates
Tssr30366 transcription start site region 30366 50 bp upstream
Tssr30367 transcription start site region 30367 94 bp upstream
Tssr30368 transcription start site region 30368 111 bp upstream
Tssr30369 transcription start site region 30369 124 bp upstream
Tssr30370 transcription start site region 30370 131 bp upstream
Tssr30371 transcription start site region 30371 151 bp upstream
Tssr30372 transcription start site region 30372 164 bp upstream
Tssr30373 transcription start site region 30373 215 bp upstream
Tssr30374 transcription start site region 30374 233 bp upstream
Tssr30375 transcription start site region 30375 246 bp upstream
Tssr30376 transcription start site region 30376 272 bp upstream
Tssr30377 transcription start site region 30377 294 bp upstream
Tssr30378 transcription start site region 30378 327 bp upstream
Tssr30379 transcription start site region 30379 345 bp upstream
Tssr30380 transcription start site region 30380 425 bp upstream
Tssr30381 transcription start site region 30381 443 bp upstream
Tssr30382 transcription start site region 30382 502 bp upstream
Tssr30383 transcription start site region 30383 513 bp upstream
Tssr30384 transcription start site region 30384 522 bp upstream
Tssr30385 transcription start site region 30385 538 bp upstream
Tssr30386 transcription start site region 30386 559 bp upstream
Tssr30387 transcription start site region 30387 650 bp upstream
Tssr30388 transcription start site region 30388 676 bp upstream
Tssr30389 transcription start site region 30389 690 bp upstream
Tssr30390 transcription start site region 30390 762 bp upstream
Tssr30391 transcription start site region 30391 781 bp upstream
Tssr30392 transcription start site region 30392 799 bp upstream
Tssr30393 transcription start site region 30393 816 bp upstream
Tssr30394 transcription start site region 30394 836 bp upstream
Tssr30395 transcription start site region 30395 861 bp upstream
Tssr30396 transcription start site region 30396 910 bp upstream
Tssr30397 transcription start site region 30397 927 bp upstream
Tssr30398 transcription start site region 30398 1002 bp upstream
Tssr30399 transcription start site region 30399 1049 bp upstream
Tssr30400 transcription start site region 30400 1534 bp upstream
Tssr30401 transcription start site region 30401 1554 bp upstream
Tssr30402 transcription start site region 30402 1653 bp upstream
Tssr30403 transcription start site region 30403 1693 bp upstream
Tssr34352 transcription start site region 34352 658 bp upstream
Tssr34353 transcription start site region 34353 652 bp upstream
Tssr34354 transcription start site region 34354 601 bp upstream
Tssr34355 transcription start site region 34355 504 bp upstream
Tssr34356 transcription start site region 34356 163 bp downstream
Tssr34357 transcription start site region 34357 208 bp downstream
Tssr34358 transcription start site region 34358 260 bp downstream
Tssr34359 transcription start site region 34359 329 bp downstream
Tssr34360 transcription start site region 34360 410 bp downstream
Tssr34361 transcription start site region 34361 431 bp downstream
Tssr34362 transcription start site region 34362 480 bp downstream
Tssr34363 transcription start site region 34363 507 bp downstream
Tssr34364 transcription start site region 34364 524 bp downstream
Tssr34365 transcription start site region 34365 538 bp downstream
Tssr34366 transcription start site region 34366 598 bp downstream
Tssr34367 transcription start site region 34367 731 bp downstream
Tssr34368 transcription start site region 34368 810 bp downstream
Tssr34369 transcription start site region 34369 835 bp downstream
Tssr34370 transcription start site region 34370 849 bp downstream
Tssr34371 transcription start site region 34371 903 bp downstream
Tssr34372 transcription start site region 34372 1666 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory