rs216612368 SNP Detail

Summary

• ID
  rs216612368
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178166737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCCTGT GTAGATTGCA
  CCCAAGCTAT GCTTGGTGGT ACATGTGTAT AATTTCAACA CTTGGGAGAT ACAGGTAAGA
  TGATCAAGAA TTCAGTGTCA GCCAGGCAGG CAGTGGTGAC ACCCAAGTTT GGCTCCAGCG
  CTCAGGAAGC AGAGGCACCC CACCCACCCA CCCCCATCCC CTCACCCCCA CCCCCACCCT
  G
  TCTATGAAGC CAGTTCCAGG ACAGCCAGAG CTACACAAAG AAACCCTGTC TCAAGCTAAG
  CAACTAAGCA ACTCAGTCAA TAAAATTCAT TGTCATCCTT GGCTACAAAA GTTCAAAGCC
  AGTAGGAGAT ACCTGAGACC CTGTCTTTAC AAAAACCAAG CACACCAAAA TGTGAAACTA
  TATATACTGG TGCACTGGTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352535495	MGP_WTSI_1_180269303	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216612368					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352535495	MGP_WTSI_1_180269303	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178166737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	1088 bp distal
Gm38300	predicted gene, 38300	429 bp upstream
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	1375 bp upstream
Rr20721	regulatory region 20721	1864 bp proximal
Rr29068	regulatory region 29068	336 bp distal
Rr372516	regulatory region 372516	242 bp downstream
Tssr317	transcription start site region 317	1581 bp upstream
Tssr318	transcription start site region 318	1356 bp upstream
Tssr10387	transcription start site region 10387	1994 bp downstream
Tssr10388	transcription start site region 10388	1856 bp downstream
Tssr10389	transcription start site region 10389	1270 bp downstream
Tssr10390	transcription start site region 10390	1185 bp downstream
Tssr10391	transcription start site region 10391	974 bp downstream
Tssr15485	transcription start site region 15485	2000 bp upstream
Tssr15486	transcription start site region 15486	1919 bp upstream
Tssr15487	transcription start site region 15487	1853 bp upstream
Tssr15488	transcription start site region 15488	1520 bp upstream
Tssr15489	transcription start site region 15489	1478 bp upstream
Tssr15490	transcription start site region 15490	1439 bp upstream
Tssr15491	transcription start site region 15491	1411 bp upstream
Tssr15492	transcription start site region 15492	1378 bp upstream