rs216616948 SNP Detail

Summary

• ID
  rs216616948
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81318751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCGCCAC AGCGCCTCTG
  GCGGCCGCCT CGGCTACTTC AGGGGGCGGG CGGCGCTGGC GCCGGGAAAC TGAGGCCTCG
  AGGCTGGCAG AGAAATGGGG ACCCCAAAGA GAAACTGAGG CTCAGAAGTC CTGAAGCTGT
  GGGGGACTTC AGGCTGGGCA TGCCCATCAG AAAGACTGAT AGGGACGTGC ATAATGAAAG
  M
  CAGCCTGTGA CATGGACACA TAGGGCAGGA CAGGGTCAGG GCGGTGACAC CTAAGGAGGG
  TAGAGAAACG AGACAGGCCA CTTGAGGCCA GAAGCAGACA CCCAGGCTGG CTCTTGCAAG
  CAATCCTCCT GCCTCAGTTG CCTCCATCCT CAGACTGGAA TGGCAGGTCT GTGCTAGCAT
  GCCTGGTTCA TATTTTTATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381036792	MGP_WTSI_10_80945662	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216616948					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381036792	MGP_WTSI_10_80945662	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81318751 () rs orientation: forward

Symbol	Name	Function Class
Celf5	CUGBP, Elav-like family member 5	208 bp upstream
Cpgi1992	CpG island 1992	within coordinates
Rr435679	regulatory region 435679	244 bp distal
Rr435680	regulatory region 435680	within coordinates
Rr435681	regulatory region 435681	1086 bp proximal
Rr435682	regulatory region 435682	1539 bp proximal
Tssr98622	transcription start site region 98622	804 bp upstream
Tssr98623	transcription start site region 98623	767 bp upstream
Tssr98624	transcription start site region 98624	564 bp upstream
Tssr98625	transcription start site region 98625	273 bp upstream
Tssr98626	transcription start site region 98626	264 bp upstream
Tssr98627	transcription start site region 98627	192 bp upstream