rs216628033 SNP Detail

Summary

• ID
  rs216628033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72540514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGAACT GGGGCTTCCC
  TATACAGCAA CAGCCAGGTA GCAAAAATAG AGCACCAAGA CCAGTATGAG TGACAGGCCA
  AAAGAGGTGC ACCCAGAGAC AAGCTTCTGG CTTCTCACAC ACAACTATAC CCTCCTAGCC
  TGGCAATCCA GGGCACCCAA TGTCCCCAGG TTTCTCCTTT TGGGGGTGGG AGGCGCCACT
  Y
  GGTGTTGTGG CCCAGCGATA GAATGTCACC CAGCAGCATC ATAGCACTAT TCTGGGGCAT
  GTGCTCCACA GCCTGGCAAT CTCTGCTGAG CTGGGCAGAC ACAGGGCAAG GGCACTGGCC
  AAAGGCCAGG AGTCAGGGCC TCAATCCGGT CCCCGTGCTG GTAGTAAGGA GGGGCAAGCA
  GCAAGGAGAC CTGGTGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771619	MGP_WTSI_X_70742247	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216628033					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771619	MGP_WTSI_X_70742247	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72540514 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	975 bp downstream
Rr7747	regulatory region 7747	1777 bp distal
Tssr5635	transcription start site region 5635	1844 bp upstream
Tssr161235	transcription start site region 161235	1992 bp downstream
Tssr161236	transcription start site region 161236	1945 bp downstream
Tssr161237	transcription start site region 161237	1920 bp downstream
Tssr161238	transcription start site region 161238	1884 bp downstream
Tssr161239	transcription start site region 161239	1833 bp downstream
Tssr161240	transcription start site region 161240	1799 bp downstream
Tssr161241	transcription start site region 161241	1776 bp downstream
Tssr161242	transcription start site region 161242	1605 bp downstream
Tssr161243	transcription start site region 161243	1576 bp downstream
Tssr161244	transcription start site region 161244	1506 bp downstream
Tssr161245	transcription start site region 161245	1456 bp downstream
Tssr161246	transcription start site region 161246	1313 bp downstream
Tssr161247	transcription start site region 161247	1278 bp downstream
Tssr161248	transcription start site region 161248	1020 bp downstream
Tssr163551	transcription start site region 163551	1872 bp upstream
Tssr163552	transcription start site region 163552	1810 bp upstream
Tssr163553	transcription start site region 163553	1737 bp upstream
Tssr163554	transcription start site region 163554	1712 bp upstream
Tssr163555	transcription start site region 163555	1614 bp upstream