rs216638795 SNP Detail

Summary

• ID
  rs216638795
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72220654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGGAGAT TTGAAGTAAC
  TTCATCCTTG CTCCGATATC CATGGCAGGA ACGTGATGCC CTACGCCATC TGCTGGTGAT
  AAGGCAGTAC TGCATGCACT GGCTCTTGCC ACCTGTCAGT ACACTTGACT GAGGGCCTTC
  TAGTTGACTG ATATTTTTAC TGTGACCTTA TTTATTTATT TTCATTCCTT TGAAACAGCT
  W
  TCTCGGGCCA TTAACTTTCA TGATTTTTTT CTTAGAAATA TAAAATTAAT GCAGTGAGCT
  CCCATCTAGA TCGGAGGGCT TTTTTTTTTT TCTGGTCTAA AATAACTTAA CAAAAGCTTG
  GTATGACATT GTTTCCCACA GTAACATGTA ATCAGACCAC TTCCCCTCAA GCTCCATATG
  TGTGCCTCAT TGCTCTTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342253	CHEV_2_72228367	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216638795					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72220654 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr558965	regulatory region 558965			within coordinates
Rr558966	regulatory region 558966			120 bp distal
Rr558967	regulatory region 558967			649 bp proximal
Tssr18338	transcription start site region 18338			91 bp upstream
Tssr18339	transcription start site region 18339			409 bp upstream
Tssr18340	transcription start site region 18340			431 bp upstream
Tssr18341	transcription start site region 18341			446 bp upstream