rs216640042 SNP Detail

Summary

• ID
  rs216640042
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:111933848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGAATC TGGTCGGAGT
  CAGGATGAGG ACCCACGCAT CCCAGGGTCA CCTGGTCAGC ACTGGGTCTG GTGTGTTGCT
  CTCATAGCAG AGGAGGACAG CAGTCAGTGA GGACTAATGC AGCAATGATG TCTCTGTGTG
  CTTGCCAGTC CTCTGAGGGT GAGAAATGCT CATGCATACT TAGATCAATC ACAGTCTCTA
  M
  AGGGATGGGC CAGGCCTTCC TTAGCATCCT AGACAGTCTC AGAATACAGA TACTCATGGG
  AACTGAAGTT ATAGAGGTTT GTCTGGGGTA AGGGCTCTTA GGCCCAGGAC TGAGTACTGC
  TGATCAGGGT GCTGGAGATA CCAACACAAG TGTAGAAGTT CCTCCTCCAC TCAGGCTACT
  CTGTGACCTT TCTCAAGGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322412404	CHEV_7_119478155	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216640042					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:111933848 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mical2	microtubule associated monooxygenase, calponin and LIM domain containing 2			Intron
				Noncoding-Transcript-Variant
Tssr68564	transcription start site region 68564			1952 bp upstream