rs216640486 SNP Detail

Summary

• ID
  rs216640486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12772960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGTTCTA GGGTCCAAGG
  TGGACGTGGG TATAGGACTC ATAACTGCGG CTTAGAGAAC AGCAGAAGTG GCATTGGCTC
  TCTCGAGTGG CATTGTGCCT CTCGATTGGC TTATGTTGAG TGAGCTTAGG GTGCTTGGGA
  GGCAGAAGGA AATAGCTCAG GATGGGTCAG TGACTTCAGG CTGTCATCTA GGAATCCAGC
  Y
  GAAGCCAGAG TCTAAATGCT TCTTGTTGCT TGTCTGGTCA CAGCTTGAAA AACATGGCCA
  GAACAGGTTC GGACTCTGTT CTGCTCTTTG CCATCTGACA GCATTTGTGC CACCCAGCAT
  GACCCGCGGT TCTACATTCC AGACTTAGCC AGCAGCACCC TCCTCCTCCT GACTTTTTAA
  GGCTAGCTCA TTCTGAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370655001	MGP_WTSI_7_13624382	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216640486					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370655001	MGP_WTSI_7_13624382	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12772960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18335	CpG island 18335	230 bp distal
Gm71833	predicted gene, 71833	within coordinates
Rr400106	regulatory region 400106	519 bp downstream
Rr642445	regulatory region 642445	1045 bp distal
Rr642446	regulatory region 642446	1367 bp distal
Rr642447	regulatory region 642447	771 bp distal
Rr642448	regulatory region 642448	268 bp distal
Rr642449	regulatory region 642449	733 bp proximal
Tssr64535	transcription start site region 64535	1333 bp downstream
Tssr64536	transcription start site region 64536	986 bp downstream
Tssr70652	transcription start site region 70652	1366 bp upstream
Tssr70653	transcription start site region 70653	1341 bp upstream
Tssr70654	transcription start site region 70654	1201 bp upstream
Tssr70655	transcription start site region 70655	1082 bp upstream
Tssr70656	transcription start site region 70656	1064 bp upstream
Tssr70657	transcription start site region 70657	726 bp upstream
Tssr70658	transcription start site region 70658	711 bp upstream
Ube2m	ubiquitin-conjugating enzyme E2M	758 bp upstream