rs216642683 SNP Detail

Summary

• ID
  rs216642683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156033964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCAGGA GACAATGTTC
  CAGTTTGTTC TCTCCTTCCA CTGAGGGTTC CAGGCTCAAA CTCAGGTTAC CAGACCCTCA
  AGACAAACTC CTCTACCCAC TGAACTGTCT TACTCTTCTT TTGTTAAAAG AGTCTCATTA
  TGTAGCTGAG GCTAGCCTAG AACTCCCCAA CATGGCCAGC ATGGGTTATC TTCACCCCCC
  Y
  CCCCAAATAA AAACAATCAA AGTCTAGCTC TAAGGATACT TTATTCATCA GTATCAGGTT
  GCTTGCTAAG CCTTTCTCCT ACCATCCCTC CCCTGTCTGC ATTTGGAAGA ACACAGGGCA
  GACCATTCTG CTCATCCCTG GTGGCCAACC CCAGCCACAT GTCCTGCAAT TGGCTGATCA
  ACAGTGACTG CTGGTCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	ST/bJ	WSB/EiJ
ss356231007	MGP_WTSI_2_156017780	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	ST/bJ	WSB/EiJ
rs216642683					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356231007	MGP_WTSI_2_156017780	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156033964 () rs orientation: forward

Symbol	Name	Function Class
Rr568205	regulatory region 568205	1023 bp distal
Rr568206	regulatory region 568206	525 bp distal
Rr568207	regulatory region 568207	312 bp distal