rs216656088 SNP Detail

Summary

• ID
  rs216656088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91013064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCTGGAC AGCTCTGGCC
  GCCCCCTCAC CTGCTGGACA GCTCCTCGTC CCCACCCGGG AAGCCGCCCC GCGGGCCCAC
  AGCCCCGCAG CCGCACGGGC TCCCCGCCCG ACCCCCGCCT CACTTTCTCA GCAGGCTCCA
  CGCCCCCTCG CGCTCGCTCG CTCCTCCAGG GCCGCCTCAG AGACCCTCTC CTCCCGGAGC
  Y
  GCTTTTCCTC TCAGGCTCCG CGTTCCCCCT CAAAGCCCCA CACGGGGCTC CCGACCGCGG
  GCGCTCAGCT ACCTACTCTC GGAGGAGGCT GCCAGGCCCA CCCGACGTCT CCCGGCCGGC
  GGCGGGGCGC TCCTCGCTTC CTAGCCGGGC GCCGCGGCGA GCGGGCGCCA GTTCCGCGTC
  TGCACCGGGG GGCGCGTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354809287	MGP_WTSI_2_91022876	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216656088					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354809287	MGP_WTSI_2_91022876	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91013064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	within coordinates
Gm74571	predicted gene, 74571	257 bp downstream
Madd	MAP-kinase activating death domain	within coordinates
Nr1h3	nuclear receptor subfamily 1, group H, member 3	1342 bp downstream
Rr367225	regulatory region 367225	1169 bp upstream
Rr397125	regulatory region 397125	380 bp upstream
Rr560660	regulatory region 560660	520 bp distal
Rr560661	regulatory region 560661	within coordinates
Rr560662	regulatory region 560662	43 bp distal
Rr560663	regulatory region 560663	119 bp proximal
Rr560664	regulatory region 560664	178 bp proximal
Rr560665	regulatory region 560665	1089 bp proximal
Tssr18868	transcription start site region 18868	507 bp downstream
Tssr25161	transcription start site region 25161	149 bp downstream
Tssr25162	transcription start site region 25162	222 bp downstream
Tssr25163	transcription start site region 25163	298 bp downstream
Tssr25164	transcription start site region 25164	1104 bp downstream
Tssr25165	transcription start site region 25165	1122 bp downstream
Tssr25166	transcription start site region 25166	1235 bp downstream
Tssr25167	transcription start site region 25167	1258 bp downstream