rs216657050 SNP Detail

Summary

• ID
  rs216657050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAACCAC ATGGTCTTTG
  TGATTTCTTT GTGTGCCCTT TGATGGAATT CAGAATCTTT TAATATGAAG CTCCTAGAGA
  TTCTAGGGAT ACAGAAGAGA TAGCACAATA TAATAAAGGT AACATAAAAC AACCCAAATT
  CCAGCATGAA TGGCATGGAG CTCATGAAAT TCCATCCTCA GCTGAGGATG GTCAATTGGC
  Y
  ATTGTTGCCT GCTGGAGCAG GTGGAGTGTG GGATGTGGTT GCCGAGAGGC TATGGTCCAG
  TAGAAAGCCT TATACTCAAG TGCATTCAGG AAGCACTGAG CAGATAGAGT GGGTTTAAAA
  CAAAGAGGAG CACATGAAAT TGGGAGGGAA AATCAGTGAG GTGGATAGGA GCAGGTTGTA
  GTGAGGAGAG TAAGGATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922365	MGP_WTSI_6_123232319	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216657050					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922365	MGP_WTSI_6_123232319	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259260 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	429 bp upstream
Tssr58809	transcription start site region 58809	1091 bp upstream
Tssr58810	transcription start site region 58810	1117 bp upstream
Tssr58811	transcription start site region 58811	1153 bp upstream
Tssr63019	transcription start site region 63019	729 bp upstream
Tssr63020	transcription start site region 63020	192 bp downstream
Tssr63021	transcription start site region 63021	278 bp downstream
Tssr63022	transcription start site region 63022	313 bp downstream
Tssr63023	transcription start site region 63023	341 bp downstream
Tssr63024	transcription start site region 63024	444 bp downstream
Tssr63025	transcription start site region 63025	497 bp downstream
Tssr63026	transcription start site region 63026	508 bp downstream
Tssr63027	transcription start site region 63027	557 bp downstream
Tssr63028	transcription start site region 63028	570 bp downstream
Tssr63029	transcription start site region 63029	601 bp downstream
Tssr63030	transcription start site region 63030	631 bp downstream
Tssr63031	transcription start site region 63031	688 bp downstream
Tssr63032	transcription start site region 63032	712 bp downstream
Tssr63033	transcription start site region 63033	737 bp downstream
Tssr63034	transcription start site region 63034	756 bp downstream
Tssr63035	transcription start site region 63035	777 bp downstream
Tssr63036	transcription start site region 63036	831 bp downstream
Tssr63037	transcription start site region 63037	861 bp downstream
Tssr63038	transcription start site region 63038	898 bp downstream
Tssr63039	transcription start site region 63039	957 bp downstream
Tssr63040	transcription start site region 63040	1015 bp downstream
Tssr63041	transcription start site region 63041	1064 bp downstream
Tssr63042	transcription start site region 63042	1089 bp downstream
Tssr63043	transcription start site region 63043	1099 bp downstream
Tssr63044	transcription start site region 63044	1121 bp downstream
Tssr63045	transcription start site region 63045	1212 bp downstream
Tssr63046	transcription start site region 63046	1231 bp downstream
Tssr63047	transcription start site region 63047	1254 bp downstream
Tssr63048	transcription start site region 63048	1282 bp downstream
Tssr63049	transcription start site region 63049	1297 bp downstream
Tssr63050	transcription start site region 63050	1321 bp downstream
Tssr63051	transcription start site region 63051	1373 bp downstream