rs216657307 SNP Detail

Summary

• ID
  rs216657307
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13250935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGCGCC TAGGGACCCG
  AACCGAGTGC ACCTGCTGCA GCCTGGCACT AGGGATTTGA AAATCCATGG AGATGGAAAC
  CTATGCCGAG GTTAGAAGAC CTGGATCCAC TTTGCAGGAT TTTAAATATC CTTCAAGCCT
  CAGTGCCTGG CAGACTGGAC TTTGGACTTC GGACTTCCAG CTCCGATGCT GAAAAAGGAG
  G
  GTTTTTTTGT TTGTTTGTTT TTCCACTTTG CTTCCTTGCT TGTCGAGGCT GAGAACATAC
  GGTGTTTTTG AGGGCCACCA TCAAAGGGTA CTCGCTTCTC CAAACCTTGG AACCCGAGGT
  CTAGCCTTGG AAAGAGTTGC CGCCTTACCA TCTCTCCTCG CCTAGGGAAG CCCCAGCTGT
  GTGCGCTACT GCAGGGTCAC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373740656	MGP_WTSI_8_13200935	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs216657307					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373740656	MGP_WTSI_8_13200935	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13250935 () rs orientation: forward

Symbol	Name	Function Class
2810030D12Rik	RIKEN cDNA 2810030D12 gene	within coordinates
Cpgi20110	CpG island 20110	within coordinates
Gm56825	predicted gene, 56825	within coordinates
Grtp1	GH regulated TBC protein 1	240 bp upstream
Rr659872	regulatory region 659872	1367 bp distal
Rr659873	regulatory region 659873	within coordinates
Rr659874	regulatory region 659874	30 bp proximal
Rr659875	regulatory region 659875	549 bp proximal
Rr659876	regulatory region 659876	937 bp proximal
Rr659877	regulatory region 659877	1288 bp proximal
Tssr76386	transcription start site region 76386	148 bp downstream
Tssr76387	transcription start site region 76387	11 bp upstream
Tssr80428	transcription start site region 80428	299 bp upstream
Tssr80429	transcription start site region 80429	478 bp downstream