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rs216666498 SNP Detail
Summary
  • ID
    rs216666498
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr8:121216694 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTAAGCCCT GGCACACAGT
    TTCTATTGAA GTTGAGGCGT CTGTGGGGTG CAGAAATGTT GGGGTGCTGA AGGAGCAGAG
    GGGCGGCCTT CGTGCATGAC ATGGTCTGCT CTTTTCTGCA GATGATTTGG GAATAGTTTT
    GCTAGGAAAC GTAGGAAACG TGCACGTGGC TGGGTGTTGG GTTAACATTG CCTCCCCCCG
    Y
    CCCCACTTGT GTGTTGTGTG GATCCTGTGG CTCTTGCCAG ATCTCCACCA ACCTGGAGTC
    CAGAGAAGGA GATGTGGGCC AAGAACCTGC CTGGGCAGGA CTCAGCTACA GGGAGCTGGC
    CCTAGTCGTC CTGACCTAGG GCACACGTTG TAACTGAGTT AATGTAGCAG AGATGAAAGG
    TCGCAAGGAA AAGCGGGTGG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss376271977 MGP_WTSI_8_123013855 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T C T T T T C T C T T T C T T C T T T C T T T T T T C T T T C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216666498 SNP T T T T T T T T T T T T T T T T T T T C T T C T T T T C T C T T T C T T C T T T C T T T T T T C T T T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss376271977 MGP_WTSI_8_123013855 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:121216694 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi21144 CpG island 21144 1554 bp distal
Cpgi21145 CpG island 21145 within coordinates
Gm51556 predicted gene, 51556 287 bp upstream
Gse1 genetic suppressor element 1, coiled-coil protein Intron
Rr671535 regulatory region 671535 1498 bp distal
Rr671536 regulatory region 671536 1885 bp distal
Rr671537 regulatory region 671537 1528 bp distal
Rr671538 regulatory region 671538 554 bp distal
Rr671539 regulatory region 671539 1577 bp proximal
Tssr79756 transcription start site region 79756 1755 bp downstream
Tssr79757 transcription start site region 79757 1730 bp downstream
Tssr79758 transcription start site region 79758 1714 bp downstream
Tssr79759 transcription start site region 79759 1465 bp downstream
Tssr79760 transcription start site region 79760 1445 bp downstream
Tssr79761 transcription start site region 79761 1386 bp downstream
Tssr79762 transcription start site region 79762 1207 bp downstream
Tssr79763 transcription start site region 79763 1152 bp downstream
Tssr79764 transcription start site region 79764 1115 bp downstream
Tssr79765 transcription start site region 79765 888 bp downstream
Tssr83193 transcription start site region 83193 611 bp upstream
Tssr83194 transcription start site region 83194 502 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory