TCTAAGCCCT GGCACACAGT TTCTATTGAA GTTGAGGCGT CTGTGGGGTG CAGAAATGTT GGGGTGCTGA AGGAGCAGAG GGGCGGCCTT CGTGCATGAC ATGGTCTGCT CTTTTCTGCA GATGATTTGG GAATAGTTTT GCTAGGAAAC GTAGGAAACG TGCACGTGGC TGGGTGTTGG GTTAACATTG CCTCCCCCCG Y CCCCACTTGT GTGTTGTGTG GATCCTGTGG CTCTTGCCAG ATCTCCACCA ACCTGGAGTC CAGAGAAGGA GATGTGGGCC AAGAACCTGC CTGGGCAGGA CTCAGCTACA GGGAGCTGGC CCTAGTCGTC CTGACCTAGG GCACACGTTG TAACTGAGTT AATGTAGCAG AGATGAAAGG TCGCAAGGAA AAGCGGGTGG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss376271977 | MGP_WTSI_8_123013855 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C | T | T | T | C | T | T | C | T | T | T | C | T | T | T | T | T | T | C | T | T | T | C |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs216666498 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | C | T | T | T | T | C | T | C | T | T | T | C | T | T | C | T | T | T | C | T | T | T | T | T | T | C | T | T | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss376271977 | MGP_WTSI_8_123013855 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr8:121216694 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi21144 | CpG island 21144 | 1554 bp distal | ||||||
Cpgi21145 | CpG island 21145 | within coordinates | ||||||
Gm51556 | predicted gene, 51556 | 287 bp upstream | ||||||
Gse1 | genetic suppressor element 1, coiled-coil protein | Intron | ||||||
Rr671535 | regulatory region 671535 | 1498 bp distal | ||||||
Rr671536 | regulatory region 671536 | 1885 bp distal | ||||||
Rr671537 | regulatory region 671537 | 1528 bp distal | ||||||
Rr671538 | regulatory region 671538 | 554 bp distal | ||||||
Rr671539 | regulatory region 671539 | 1577 bp proximal | ||||||
Tssr79756 | transcription start site region 79756 | 1755 bp downstream | ||||||
Tssr79757 | transcription start site region 79757 | 1730 bp downstream | ||||||
Tssr79758 | transcription start site region 79758 | 1714 bp downstream | ||||||
Tssr79759 | transcription start site region 79759 | 1465 bp downstream | ||||||
Tssr79760 | transcription start site region 79760 | 1445 bp downstream | ||||||
Tssr79761 | transcription start site region 79761 | 1386 bp downstream | ||||||
Tssr79762 | transcription start site region 79762 | 1207 bp downstream | ||||||
Tssr79763 | transcription start site region 79763 | 1152 bp downstream | ||||||
Tssr79764 | transcription start site region 79764 | 1115 bp downstream | ||||||
Tssr79765 | transcription start site region 79765 | 888 bp downstream | ||||||
Tssr83193 | transcription start site region 83193 | 611 bp upstream | ||||||
Tssr83194 | transcription start site region 83194 | 502 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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