rs216667966 SNP Detail

Summary

• ID
  rs216667966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112684685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTCCGAC TATCCACCCC
  CTCCATGCTT CAGGGCCATG ACATGCCCTC CTCTGCTCTG TCCCAGTCTC CCTGCCACGA
  TGGACTGAAG CCTCTGAAAC TATAAACAAG AATACATTTC TCCTCCCTTA AATAGCCTGT
  ATCAGGGATC TTGTTACAGC AAGGGGGCTG GAGAGATGGC TCAGTGGTTA AGAGCTGCTG
  Y
  TCTTCCGAAG GTCCTGAGTT CAAATCCCAG CAGCCACATA GTGGCTCATA ACCATCCCAA
  ATTAGATCTG AGGCCTGGTG TGTCTGAAGA CAGCTACAGT GTACTTACAT ATAATAAATA
  AATCACCAGG CGTGGTGCCA CACGCCTTTA ATCCCAGCAC TCTGGAGGCA GGGGCAGGCA
  GATTTCTGAG TTCGAGGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170465	CHEV_12_113956462	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216667966					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112684685 () rs orientation: forward

Symbol	Name	Function Class
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473580	regulatory region 473580	1403 bp distal
Rr473581	regulatory region 473581	823 bp distal
Rr473582	regulatory region 473582	912 bp distal
Tssr115398	transcription start site region 115398	986 bp upstream