rs216668101 SNP Detail

Summary

• ID
  rs216668101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9775562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    caatccctc cacttgtctt gtctggttat
  aggagactat tgttccaggc catctctccc actactagga gtctttacta gggttgttct
  tgtagattcc tgggcgcttc cattgtcctg ggtttctagc tcacccctga gatgATCTGA
  Y
  TCAGGGCAAA GGAGTCCCGC TGACCGTTAC TGACCTCAAG TGACACTATG ACACCTGTGG
  ATCACACCAA GCTGAGCTCC AGAAGGTGGT AGTGTTAACA CAGCTAGAGA GCAGTGAACA
  GTTGTGCACA AGGTCTTTTT GCTTTATAGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320651873	CHEV_3_9710502	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs216668101					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9775562 () rs orientation: forward

Symbol	Name	Function Class
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1	within coordinates
Rr69578	regulatory region 69578	1162 bp distal
Rr69580	regulatory region 69580	362 bp distal
Rr69581	regulatory region 69581	39 bp proximal
Rr76860	regulatory region 76860	679 bp distal
Rr76861	regulatory region 76861	381 bp proximal
Rr82268	regulatory region 82268	1170 bp distal